ITB

engineDB is a repository for precalculated functional analogouse gene products using the gene ontology (GO) annotation to calculate the functional analogy by semantic similarity.

The GO data used are from the GO database version 08_09.

engineDB_08_09 is a web service accessing the engineDB searching for two gene groducts (UniProt primary accession number) the functional similarity indicating the coresponding raw score and p-value (see http://funcnet.eu)

The Chaotic Map Clustering algorithm performs a non-parametric hierarchical partition of data without prior assumptions about numbers of classes and geometric distribution of clusters; as a result, the hierarchical structure of data is obtained as a tree of clusters.

PatSearch is a flexible and fast pattern matcher able to search for specific combinations of oligonucleotide consensus sequences, secondary structure elements and position-weight matrices. It can also allow for mismatches/mispairings below a user fixed threshold.

engineDB is a repository for precalculated functional analogouse gene products using the gene ontology (GO) annotation to calculate the functional analogy by semantic similarity.
The GO data used are from the GO database version 06_08.

engineDB_06_08 is a web service accessing the engineDB searching for two gene groducts (UniProt primary accession number) the functional similarity indicating the coresponding raw score and p-value (see http://funcnet.eu)