nucleotide
tBLASTx at SIB (nucleotide query sequence(s) against a nucleotide sequence dabase, both six-frame translated)
tBLASTx finds regions of similarity between the six-frame translations of a nucleotide query sequence and the six-frame translations of a nucleotide sequence database.
Computations are done on the Vital-IT cluster (SIB).
Most NCBI BLAST (2.2.17) options are available.
Most SIB databases are available: STS, EST, HTG, refseq, repbase, ...
INPUT: nucleotide sequence(s) + choose a database
OUTPUT: BLAST output
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BLASTx at SIB (nucleotide query sequence(s) translated in all reading frames against a protein sequence database)
BLASTx finds regions of similarity between a nucleotide query sequence translated in all reading frames and a protein sequence database.
Computations are done on the Vital-IT cluster (SIB).
Most NCBI BLAST (2.2.17) options are available.
Most SIB databases are available: Uniprot, UniRef, organism proteomes, refseq protein, nrl3D, ...
INPUT: nucleotide sequence(s) + choose a database
OUTPUT: BLAST output
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MEGABLAST at SIB (nucleotide query sequence(s) against a nucleotide database, for high similarity)
megaBLAST finds regions of high similarity between a nucleotide query sequence and a nucleotide sequence database.
Computations are done on the Vital-IT cluster (SIB).
Most NCBI BLAST (2.2.17) options are available.
Most SIB databases are available: STS, EST, HTG, refseq, repbase, ...
INPUT: nucleotide sequence(s) + choose a database
OUTPUT: BLAST output
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BLASTn at SIB (nucleotide query sequence(s) against a nucleotide database)
BLASTn finds regions of similarity between a nucleotide query sequence and a nucleotide sequence database.
Computations are done on the Vital-IT cluster (SIB).
Most NCBI BLAST (2.2.17) options are available.
Most SIB databases are available: STS, EST, HTG, refseq, repbase, ...
INPUT: nucleotide sequence(s) + choose a database
OUTPUT: BLAST output
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