protein domain

ProdomCG_evoscen is a set of webservices allowing to browse ProDom-CG267 evolutionary scenarios. It includes

• GetScenarioProdom : takes an ProDom-CG family (CG + 6 characters) and returns its evolutionary scenario as a string of (number of nodes) characters (absence = 1, presence = 2)
• GetPresentFamiliesProdom : takes a taxID present in ProdomCG and returns a list of ProdomCG families present at this node

ProdomCG_tree is a set of webservices allowing to browse ProDom-CG267 phylogenetic tree. It includes

• NearestNodeProdom : takes an NCBI taxID and returns the closest taxID present in ProdomCG
• GetParentProdom : takes a taxID present in ProdomCG and returns its parent
• GetChildProdom : takes a taxID present in ProdomCG and returns its child(ren)
• GetDFStreeProdom : returns the list of all the taxIDs present in ProdomCG in DFS order

fetchProDom is a set of five different webservices that interrogates the ProDom database.

• fetchdom: Enter one or several (separated by spaces) ProDom AC (eg PD000039) and it returns the family(ies) description in prodom format.
• fetchdom_fasta: same as above with the results given in fasta format.