protein evolution

ProDomCG_tree

PASSED

ProdomCG_tree is a set of webservices allowing to browse ProDom-CG267 phylogenetic tree. It includes

  • NearestNodeProdom : takes an NCBI taxID and returns the closest taxID present in ProdomCG
  • GetParentProdom : takes a taxID present in ProdomCG and returns its parent
  • GetChildProdom : takes a taxID present in ProdomCG and returns its child(ren)
  • GetDFStreeProdom : returns the list of all the taxIDs present in ProdomCG in DFS order

Hogenom_evoscen

PASSED

Hogenom_evoscen is a set of webservices allowing to browse Hogenom 4 evolutionary scenarios. It includes

  • GetScenarioHogenom : takes an Hogenom family (HBG + 6 digits) and returns its evolutionary scenario as a string of (number of nodes) characters (absence = 1, presence = 2)
  • GetPresentFamiliesHogenom : takes a taxID present in Hogenom and returns a list of Hogenom families present at this node
  • GetInheritedFamiliesHogenom : takes a taxID present in Hogenom and returns a list of Hogenom families inherited at this node