BioMart - REST and SOAP

WARNING

BioMart web service provides unified access to several databases housed at EBI/Sanger such as Ensembl Vertebrates, Ensembl Bacteria, Ensembl Protists, Ensembl Metazoa, Ensembl Variation, Ensembl Vega, Uniprot, PRIDE, HGNC & EU Rat Mart. The service also provides federated access to number of databases outside EBI including Reactome Pathways, PepSeeker, Gramene and Wormbase. For an up-to-date list of datasets, please visit, http://www.biomart.org

BioMart web service has REST style end-point as well as SOAP (WSDL document literal) end-point. All the datasets are accessible through XML-based generic querying interface which also enables data integration from local and remote data sources. For details on how to formulate BioMart data and metadata queries, please visit,
http://www.biomart.org/martservice.html

WSDL Changes

DateDescription of Changes
PASSED

Test #1: BioMart DAS Test

This test checks whether or not BioMart Central Portal's DAS is running fine. www.biomart.org/biomart/das/dsn

PASSED

Test #2: BioMart MartService Registry Test

This test checks whether or not BioMart Central Portal's MartService is running fine. It only tests the registry request. www.biomart.org/biomart/martservice?type=registry

FAILED

Test #3: DAS Validation (System)

Auto-generated DAS Validation test.

PASSED

Test #4: REST Validation (System)

Auto-generated REST Validation test.

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