BLAST blastp protein similarity search (CNRS IBCP)

FAILED
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Service version1.0
Contributor URLhttp://gbio-pbil.ibcp.fr/ws/
WSDL URLhttp://gbio-pbil.ibcp.fr/media/wsdl/BlastWS.wsdlFAILED Show/Hide Details

Description

Find local similarity with the BLAST algorithm between a query sequence of protein and a reference database of proteins.

Usage

You need to provide the following input arguments to the service:

  • “Sequence” : the query sequence
  • “SeqDatabase” : the protein sequence database to compare the query to. The value of this argument should be an identifier get among the ones of the available databases on the remote server (swiss-prot, trembl, pdb).

The outputs of the service are:

  • “Status”: the status of the query
  • “JobId”: the JobId in the remote service environment
  • “SeqSimilar”: the sequences similar to the query identified by the service. The results are sent in the raw output format of the native tool.

More help about the usage of this Web service can be find with this schematic view, with this example of Taverna workflow.

A description of the WSDL service:

Blast_Service

Namespace: http://gbio.ibcp.fr:8090/Blast_Service

Blast @ IBCP (http://gbio-pbil.ibcp.fr)

  • Port: BlastPort
  • Location: http://gbio.ibcp.fr:8090/Blast_Service
  • Protocol: http://schemas.xmlsoap.org/soap/http
  • Default Style: rpc

Operations

submitBlast

Submit a sequence an get a jobID

  • SOAP Action: urn:BlastWS.wsdl#submitBlast
  • Input Message: submitBlastRequest
    • Sequence
      • string
    • SeqDatabase
      • string
  • Output Message: submitBlastResponse
    • JobId
      • string

checkStatusBlast

Submit a jobID and get the status

  • SOAP Action: urn:BlastWS.wsdl#checkStatusBlast
  • Input Message: checkStatusBlastRequest
    • JobId
      • string
  • Output Message: checkStatusBlastResponse
    • Status
      • string

getResultsBlast

When job is finish, submit a jobid and get the results

  • SOAP Action: urn:BlastWS.wsdl#getResultsBlast
  • Input Message: getResultsBlastRequest
    • JobId
      • string
  • Output Message: getResultsBlastResponse
    • SeqSimilar
      • string
    • Logout
      • string

cancelResultsBlast

When some thing is wrong, cancel your job

  • SOAP Action: urn:BlastWS.wsdl#cancelResultsBlast
  • Input Message: cancelBlastRequest
    • JobId
      • string
  • Output Message: cancelBlastResponse
    • Status
      • string

WSDL Changes

DateDescription of Changes
8th April 2009First Snapshot
FAILED

Test #1: BLAST (blastp) functionnal test

run a BLAST search with a known sequence
check that the result is a BLAST file with the sequence in the list

Submitted by cblanchet on Fri, 09/19/2008 - 12:18
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