CATH/Gene3D HMMScan (draft WSDL)

207

Service version0.1-unreleased

WSDL URLhttp://trunk.cathdb.info/api/wsdl/HMMScan.wsdl PASSED

This service allows the CATH and Gene3D HMM libraries to be searched with a given amino acid sequence (or any one of various database identifiers representing a sequence).

NB This service is not currently active. It is still in development -- check back here for updates. The WSDL posted may change between now and the first release.

A description of the WSDL service:

HMMScan

Namespace: http://trunk.cathdb.info/api/wsdl

Port: HMMScanSOAP
Location: http://trunk.cathdb.info/HMMScan
Protocol: http://schemas.xmlsoap.org/soap/http
Default Style: document

Operations

SubmitQuery

SOAP Action: http://trunk.cathdb.info/HMMScan/SubmitQuery
Input Message: SubmitQueryRequest
- parameters
  - SubmitQuery type
    - querySeq type AminoAcidSeq
      - fastaSeq type FastaSeq
        restriction type string
      - pdbCode type PdbCode
        restriction type string
      - pdbCoords type string
      - domainID type DomainID
        restriction type string
      - chainID type ChainID
        restriction type string
    - hmmLibrary type string
    - emailAddress type string
    - enableEmailNotify type boolean
Output Message: SubmitQueryResponse
- parameters
  - SubmitQueryResponse type
    - jobID type string

MonitorJob

SOAP Action: http://trunk.cathdb.info/HMMScan/MonitorJob
Input Message: MonitorJobRequest
- parameters
  - MonitorJob type
    - jobLocator type JobLocator
      - jobID type string
      - emailAddress type string
Output Message: MonitorJobResponse
- parameters
  - MonitorJobResponse type
    - jobStatus type JobStatus
      - statusCode type string
      - description type string
      - detail type string

RetrieveHits

SOAP Action: http://trunk.cathdb.info/HMMScan/RetrieveHits
Input Message: RetrieveHitsRequest
- parameters
  - RetrieveHits type
    - jobLocator type JobLocator
      - jobID type string
      - emailAddress type string
Output Message: RetrieveHitsResponse
- parameters
  - RetrieveHitsResponse type
    - ssfResult type SSFResult
      - accession type string
      - modelName type string
      - sequenceLength type int
      - modelLength type int
      - alignmentLength type int
      - matchedResidueCount type int
      - querySegments type QuerySegmentList
        querySegment type QuerySegment
        startPos type SeqPos
        restriction type string
        stopPos type SeqPos
        restriction type string

CancelJob

SOAP Action: http://trunk.cathdb.info/HMMScan/CancelJob
Input Message: CancelJobRequest
- parameters
  - CancelJob type
    - jobLocator type JobLocator
      - jobID type string
      - emailAddress type string
Output Message: CancelJobResponse
- parameters
  - CancelJobResponse type
    - jobStatus type JobStatus
      - statusCode type string
      - description type string
      - detail type string

WSDL Changes

Date	Description of Changes
8th April 2009	First Snapshot
29th April 2009	Operation named SubmitQuery - Output message part type has changed Operation named MonitorJob - Output message part type has changed Operation named CancelJob - Output message part type has changed

Submitted by andrew.clegg on Thu, 11/20/2008 - 16:02