CLUSTAL W multiple alignment (CNRS IBCP)

PASSED
91
Service version1.0
Contributor URLhttp://gbio-pbil.ibcp.fr/ws
WSDL URLhttp://gbio-pbil.ibcp.fr/media/wsdl/ClustalwWS.wsdlFAILED Show/Hide Details

Description

Global multiple alignment of several sequences of proteins with the ClustalW algorithm.

Usage

You need to provide the following input arguments to the service:

  • “Sequences” : the set of sequences of proteins to align. These sequences must be stored in Pearson-Fasta format

The outputs of the service are:

  • “Status”: the status of the query
  • “JobId”: the JobId in the remote service environment
  • “Alignement”: the aligment of the query sequences generated with the ClustalW algorithm

More help about the usage of this Web service can be find with this schematic view, with this example of Taverna workflow.

A description of the WSDL service:

Clustalw_Service

Namespace: http://gbio.ibcp.fr:8090/Clustalw_Service

Clustalw @ IBCP (http://gbio-pbil.ibcp.fr)

  • Port: ClustalwPort
  • Location: http://gbio.ibcp.fr:8090/Clustalw_Service
  • Protocol: http://schemas.xmlsoap.org/soap/http
  • Default Style: rpc

Operations

submitClustalw

Submit a sequence an get a jobID

  • SOAP Action: urn:ClustalwWS.wsdl#submitClustalw
  • Input Message: submitClustalwRequest
    • Sequences
      • string
  • Output Message: submitClustalwResponse
    • JobId
      • string

checkStatusClustalw

Submit a jobID and get the status

  • SOAP Action: urn:ClustalwWS.wsdl#checkStatusClustalw
  • Input Message: checkStatusClustalwRequest
    • JobId
      • string
  • Output Message: checkStatusClustalwResponse
    • Status
      • string

getResultsClustalw

When job is finish, submit a jobid and get the results

  • SOAP Action: urn:ClustalwWS.wsdl#getResultsClustalw
  • Input Message: getResultsClustalwRequest
    • JobId
      • string
  • Output Message: getResultsClustalwResponse
    • Alignement
      • string
    • Logout
      • string

cancelClustalw

When some thing is wrong, cancel your job

  • SOAP Action: urn:ClustalwWS.wsdl#cancelClustalw
  • Input Message: cancelClustalwRequest
    • JobId
      • string
  • Output Message: cancelClustalwResponse
    • Status
      • string

WSDL Changes

DateDescription of Changes
8th April 2009First Snapshot
PASSED

Test #1: ClustalW WS: test of bioinformatics availability

This test is submitting a small test of protein sequences to the ClustalW Web services, to evaluate the bioinformatics availability of this Web service:

  • the WS is operational
  • the WS is answering a multiple alignment
  • this multiple alignment is the good one (a comparaison is done against a reference one)
Submitted by cblanchet on Fri, 09/19/2008 - 12:09
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