CODA (using Pfam domains)

PASSED
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Service version1.0
Contributor URLhttp://funcnet.eu/
WSDL URLhttp://funcnet.eu/soap/CodaPfam.wsdlPASSED

CODA predicts functional relationships between dissimilar proteins which have domains found in one protein in another species.

This version of CODA uses Pfam domains (http://pfam.sanger.ac.uk/).

It has one operation: ScorePairwiseRelations

CODA is a component of the FuncNet function prediction pipeline. For more information, including sample requests, see http://funcnet.eu/

A description of the WSDL service:

GecoService

Namespace: http://funcnet.eu/FuncNet_1_0/

  • Port: GecoPort
  • Location: http://funcnet.eu/BioMiner-war/services/GecoService
  • Protocol: http://schemas.xmlsoap.org/soap/http
  • Default Style: document

Operations

ScorePairwiseRelations

This method runs the GECO prediction algorithm on two sets of proteins (identified by UniProt primary accessions), one query set and one reference set. The predictor performs a pairwise comparison between each query-reference pair.

  • SOAP Action: http://funcnet.eu/Geco/ScorePairwiseRelations
  • Input Message: ScorePairwiseRelationsRequest
    • parameters
      • ScorePairwiseRelations type
        • proteins1 type ProteinList
          • p type string
          • proteins2 type ProteinList
            • p type string
      • Output Message: ScorePairwiseRelationsResponse
        • parameters
          • ScorePairwiseRelationsResponse type
            • s type PairwiseScore
              • p1 type string
                • p2 type string
                  • rs type double
                    • pv type double

              WSDL Changes

              DateDescription of Changes
              8th April 2009First Snapshot
              PASSED

              Test #1: CODA results test, 6 input proteins

              Queries the prediction service with six input proteins (3 in each set) and checks the results are as expected.

              Submitted by andrew.clegg on Tue, 11/04/2008 - 10:56
              »