EMBOSS fpromlk

1798

Contributor URLhttp://emboss.sourceforge.net/apps/release/6.0/emboss/apps/fpromlk.html

WSDL URLhttp://www.ebi.ac.uk/soaplab/typed/services/phylogeny_molecular_sequence.fpromlk?wsdl PASSED

Protein phylogeny by maximum likelihood

A description of the WSDL service:

fpromlkService

Namespace: http://soaplab.ebi.ac.uk/phylogeny_molecular_sequence/fpromlk

Protein phylogeny by maximum likelihood

Port: fpromlkPort
Location: http://www.ebi.ac.uk:80/soaplab/typed/services/phylogeny_molecular_sequence.fpromlk
Protocol: http://schemas.xmlsoap.org/soap/http
Default Style: document

Operations

run

starts a job and returns its job identifier

SOAP Action: run
Input Message: run
- run
  - run type appInputs
    - sequence type sequenceInput
      - direct_data type string
      - usa type string
      - sformat type SequenceFormat
        restriction type string
      - sbegin type long
      - send type long
      - sprotein type boolean
      - snucleotide type boolean
      - sreverse type boolean
      - slower type boolean
      - supper type boolean
    - intreefile_direct_data type string
    - intreefile_url type string
    - ncategories type
      - restriction type long
    - rate type string
    - categories_direct_data type string
    - categories_url type string
    - weights_direct_data type string
    - weights_url type string
    - lengths type boolean
    - model type
      - restriction type string
    - gamma type
      - restriction type string
    - gammacoefficient type
      - restriction type float
    - ngammacat type
      - restriction type long
    - invarcoefficient type
      - restriction type float
    - ninvarcat type
      - restriction type long
    - invarfrac type
      - restriction type float
    - nhmmcategories type
      - restriction type long
    - hmmrates type string
    - hmmprobabilities type string
    - adjsite type boolean
    - lambda type
      - restriction type float
    - njumble type
      - restriction type long
    - seed type
      - restriction type long
    - global type boolean
    - outgrno type
      - restriction type long
    - trout type boolean
    - printdata type boolean
    - progress type boolean
    - treeprint type boolean
    - hypstate type boolean
Output Message: runResponse
- runResponse
  - runResponse type jobId
    - restriction type string

runAndWaitFor

starts a job, waits until it is completed and returns the job results

SOAP Action: runAndWaitFor
Input Message: runAndWaitFor
- runAndWaitFor
  - runAndWaitFor type RunAndWaitFor
Output Message: runAndWaitForResponse
- runAndWaitForResponse
  - runAndWaitForResponse type appResults
    - report type string
    - detailed_status type long
    - outfile type string
    - outfile_url type string
    - outtreefile type string
    - outtreefile_url type string

getStatus

returns status of a given job

SOAP Action: getStatus
Input Message: getStatus
- jobId
  - getStatus type getStatusRequest
    - jobId type jobId
      - restriction type string
Output Message: getStatusResponse
- jobStatus
  - getStatusResponse type jobStatus
    - restriction type string

terminate

terminates the specified job

SOAP Action: terminate
Input Message: terminateRequest
- jobId
  - terminate type terminateRequest
    - jobId type jobId
      - restriction type string

clear

informs server that resources for the specified job can be cleared

SOAP Action: clear
Input Message: clearRequest
- jobId
  - clear type clearRequest
    - jobId type jobId
      - restriction type string

waitfor

waits until the specified job terminates

SOAP Action: waitfor
Input Message: waitforRequest
- jobId
  - waitfor type waitforRequest
    - jobId type jobId
      - restriction type string

getResults

returns all results of a given job

SOAP Action: getResults
Input Message: getResults
- jobId
  - getResults type getResultsRequest
    - jobId type jobId
      - restriction type string
Output Message: getResultsResponse
- appResults
  - getResultsResponse type appResults
    - report type string
    - detailed_status type long
    - outfile type string
    - outfile_url type string
    - outtreefile type string
    - outtreefile_url type string

describe

returns a structered description of the service, in xml

SOAP Action: describe
Input Message: describeRequest
- dummy-empty-part
  - describe type describeRequest
Output Message: describeResponse
- description
  - describeResponse type string

getLastEvent

SOAP Action: getLastEvent
Input Message: getLastEventRequest
- jobId
  - getLastEvent type getLastEventRequest
    - jobId type jobId
      - restriction type string
Output Message: getLastEventResponse
- lastEvent
  - getLastEventResponse type string

getResultsInfo

SOAP Action: getResultsInfo
Input Message: getResultsInfo
- jobId
  - getResultsInfo type getResultsInfoRequest
    - jobId type jobId
      - restriction type string
Output Message: getResultsInfoResponse
- jobStatus
  - getResultsInfoResponse type getResultsInfoResponse
    - resultsInfoList type resultInfo
      - name type string
      - type type string
      - length type long
      - size type long

WSDL Changes

Date	Description of Changes
8th May 2009	First Snapshot
11th August 2009	Operation named run has changed action to: run Operation named runAndWaitFor has changed action to: runAndWaitFor An operation named getStatus has been added. An operation named terminate has been added. An operation named clear has been added. An operation named waitfor has been added. An operation named getResults has been added. An operation named describe has been added. An operation named getLastEvent has been added. An operation named getResultsInfo has been added.

Test #1: test1

derived from EMBOSS QA tests

Submitted by soaplab on Thu, 05/07/2009 - 10:48