EMBOSS patmatdb

1659

Searches protein sequences with a sequence motif

A description of the WSDL service:

patmatdbService

Namespace: http://soaplab.ebi.ac.uk/protein_motifs/patmatdb

Searches protein sequences with a sequence motif

Port: patmatdbPort
Location: http://www.ebi.ac.uk:80/soaplab/typed/services/protein_motifs.patmatdb
Protocol: http://schemas.xmlsoap.org/soap/http
Default Style: document

starts a job and returns its job identifier that can be used by the getStatus and the getResults methods

SOAP Action:
Input Message: run
- run
  - run type appInputs
    - sequence type sequenceInput
      - direct_data type string
      - usa type string
      - sformat type SequenceFormat
        restriction type string
      - sbegin type long
      - send type long
      - sprotein type boolean
      - snucleotide type boolean
      - sreverse type boolean
      - slower type boolean
      - supper type boolean
    - motif type string
Output Message: runResponse
- runResponse
  - runResponse type string

starts a job, waits until it is completed and returns the job results

SOAP Action:
Input Message: runAndWaitFor
- runAndWaitFor
  - runAndWaitFor type appInputs
    - sequence type sequenceInput
      - direct_data type string
      - usa type string
      - sformat type SequenceFormat
        restriction type string
      - sbegin type long
      - send type long
      - sprotein type boolean
      - snucleotide type boolean
      - sreverse type boolean
      - slower type boolean
      - supper type boolean
    - motif type string
Output Message: runAndWaitForResponse
- runAndWaitForResponse
  - runAndWaitForResponse type appResults
    - report type string
    - detailed_status type long
    - outfile type string
    - outfile_url type string

Date	Description of Changes
6th May 2009	First Snapshot
8th May 2009	Port named patmatdbPort has new location: http://www.ebi.ac.uk:80/soaplab/typed/services/protein_motifs.patmatdb

derived from EMBOSS QA tests

Submitted by soaplab on Tue, 05/05/2009 - 14:27