EMBOSS vrnasubopt

1746

Calculate RNA suboptimals

A description of the WSDL service:

vrnasuboptService

Namespace: http://soaplab.ebi.ac.uk/nucleic_rna_folding/vrnasubopt

Calculate RNA suboptimals

Port: vrnasuboptPort
Location: http://www.ebi.ac.uk:80/soaplab/typed/services/nucleic_rna_folding.vrnasubopt
Protocol: http://schemas.xmlsoap.org/soap/http
Default Style: document

starts a job and returns its job identifier

SOAP Action: run
Input Message: run
- run
  - run type appInputs
    - sequence type sequenceInput
      - direct_data type string
      - usa type string
      - sformat type SequenceFormat
        restriction type string
      - sbegin type long
      - send type long
      - sprotein type boolean
      - snucleotide type boolean
      - sreverse type boolean
      - slower type boolean
      - supper type boolean
    - constraintfile_direct_data type string
    - constraintfile_url type string
    - paramfile_direct_data type string
    - paramfile_url type string
    - temperature type float
    - circular type boolean
    - dos type boolean
    - gu type boolean
    - closegu type boolean
    - lp type boolean
    - convert type boolean
    - nsbases type string
    - tetraloop type boolean
    - erange type float
    - prange type float
    - sort type boolean
    - logml type boolean
    - dangles type
      - restriction type string
    - nrandom type long
Output Message: runResponse
- runResponse
  - runResponse type jobId
    - restriction type string

starts a job, waits until it is completed and returns the job results

SOAP Action: runAndWaitFor
Input Message: runAndWaitFor
- runAndWaitFor
  - runAndWaitFor type RunAndWaitFor
Output Message: runAndWaitForResponse
- runAndWaitForResponse
  - runAndWaitForResponse type appResults
    - report type string
    - detailed_status type long
    - outfile type string
    - outfile_url type string

returns status of a given job

SOAP Action: getStatus
Input Message: getStatus
- jobId
  - getStatus type getStatusRequest
    - jobId type jobId
      - restriction type string
Output Message: getStatusResponse
- jobStatus
  - getStatusResponse type jobStatus
    - restriction type string

terminates the specified job

SOAP Action: terminate
Input Message: terminateRequest
- jobId
  - terminate type terminateRequest
    - jobId type jobId
      - restriction type string

informs server that resources for the specified job can be cleared

SOAP Action: clear
Input Message: clearRequest
- jobId
  - clear type clearRequest
    - jobId type jobId
      - restriction type string

waits until the specified job terminates

SOAP Action: waitfor
Input Message: waitforRequest
- jobId
  - waitfor type waitforRequest
    - jobId type jobId
      - restriction type string

returns all results of a given job

SOAP Action: getResults
Input Message: getResults
- jobId
  - getResults type getResultsRequest
    - jobId type jobId
      - restriction type string
Output Message: getResultsResponse
- appResults
  - getResultsResponse type appResults
    - report type string
    - detailed_status type long
    - outfile type string
    - outfile_url type string

returns a structered description of the service, in xml

SOAP Action: describe
Input Message: describeRequest
- dummy-empty-part
  - describe type describeRequest
Output Message: describeResponse
- description
  - describeResponse type string

SOAP Action: getLastEvent
Input Message: getLastEventRequest
- jobId
  - getLastEvent type getLastEventRequest
    - jobId type jobId
      - restriction type string
Output Message: getLastEventResponse
- lastEvent
  - getLastEventResponse type string

SOAP Action: getResultsInfo
Input Message: getResultsInfo
- jobId
  - getResultsInfo type getResultsInfoRequest
    - jobId type jobId
      - restriction type string
Output Message: getResultsInfoResponse
- jobStatus
  - getResultsInfoResponse type getResultsInfoResponse
    - resultsInfoList type resultInfo
      - name type string
      - type type string
      - length type long
      - size type long

Date	Description of Changes
8th May 2009	First Snapshot
11th August 2009	Operation named run has changed action to: run Operation named runAndWaitFor has changed action to: runAndWaitFor An operation named getStatus has been added. An operation named terminate has been added. An operation named clear has been added. An operation named waitfor has been added. An operation named getResults has been added. An operation named describe has been added. An operation named getLastEvent has been added. An operation named getResultsInfo has been added.

derived from EMBOSS QA tests

Submitted by soaplab on Thu, 05/07/2009 - 10:46