engineDB_06_08

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Contributor URLhttp://spank.ba.itb.cnr.it/engine
WSDL URLhttp://spank.ba.itb.cnr.it/docs/engineDB_04_09.wsdl PASSED

engineDB is a repository for precalculated functional analogouse gene products using the gene ontology (GO) annotation to calculate the functional analogy by semantic similarity.
The GO data used are from the GO database version 06_08.

engineDB_06_08 is a web service accessing the engineDB searching for two gene groducts (UniProt primary accession number) the functional similarity indicating the coresponding raw score and p-value (see http://funcnet.eu)

A description of the WSDL service:

engineDBService

Namespace: http://funcnet.eu/FuncNet_1_0/

  • Port: engineDBPort
  • Location: http://spank.ba.itb.cnr.it/cgi-bin/engineDB_06_08.pl
  • Protocol: http://schemas.xmlsoap.org/soap/http
  • Default Style: document

Operations

ScorePairwiseRelations

This method runs the prediction algorithm on two sets of proteins (identified by UniProt primary accessions), one query set and one reference set. The predictor performs a pairwise comparison between each query-reference pair.

  • SOAP Action: http://funcnet.eu/engineDB/ScorePairwiseRelations
  • Input Message: ScorePairwiseRelationsRequest
    • parameters
      • ScorePairwiseRelations type
        • proteins1 type ProteinList
          • p type string
          • proteins2 type ProteinList
            • p type string
      • Output Message: ScorePairwiseRelationsResponse
        • parameters
          • ScorePairwiseRelationsResponse type
            • s type PairwiseScore
              • p1 type string
                • p2 type string
                  • rs type double
                    • pv type double

              WSDL Changes

              DateDescription of Changes
              8th April 2009First Snapshot
              6th May 2009Service namespace changed to: http://funcnet.eu/FuncNet_1_0/
              Operation named ScorePairwiseRelations has changed action to: http://funcnet.eu/engineDB/ScorePairwiseRelations
              Operation named ScorePairwiseRelations - Input message part type has changed
              Operation named ScorePairwiseRelations - Output message part type has changed
              30th June 2009Port named engineDBPort has new location: http://spank.ba.itb.cnr.it/cgi-bin/engineDB_06_08.pl
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              Test #1: engineDB_06_08 _test

              Submitted by itb-bari on Fri, 11/21/2008 - 11:55
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