FASTA protein similarity search (CNRS IBCP)

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Contributor URLhttps://gbio-pbil.ibcp.fr/ws
WSDL URLhttp://gbio-pbil.ibcp.fr/media/wsdl/FastaWS.wsdlFAILED Show/Hide Details

Description

Find sequence similarity with the FASTA algorithm between a query sequence of protein and a reference database of proteins.

Usage

You need to provide the following input arguments to the service:

  • “Sequence” : the query sequence
  • “SeqDatabase” : the protein sequence database to compare the query to. The value of this argument should be an identifier get among the ones of the available databases on the remote server (swiss-prot, trembl, pdb).

The outputs of the service are:

  • “Status”: the status of the query
  • “JobId”: the JobId in the remote service environment
  • “SeqSimilar”: the sequences similar to the query identified by the service. The results are sent in the raw output format of the native tool.

More help about the usage of this Web service can be find on the IBCP Web Services home at http://gbio-pbil.ibcp.fr/ws

A description of the WSDL service:

Fasta_Service

Namespace: http://gbio.ibcp.fr:8090/Fasta_Service

Fasta @ IBCP (http://gbio-pbil.ibcp.fr)

  • Port: FastaPort
  • Location: http://gbio.ibcp.fr:8090/Fasta_Service
  • Protocol: http://schemas.xmlsoap.org/soap/http
  • Default Style: rpc

Operations

submitFasta

Submit a sequence an get a jobID

  • SOAP Action: urn:FastaWS.wsdl#submitFasta
  • Input Message: submitFastaRequest
    • Sequence
      • string
    • SeqDatabase
      • string
  • Output Message: submitFastaResponse
    • JobId
      • string

checkStatusFasta

Submit a jobID and get the status

  • SOAP Action: urn:FastaWS.wsdl#checkStatusFasta
  • Input Message: checkStatusFastaRequest
    • JobId
      • string
  • Output Message: checkStatusFastaResponse
    • Status
      • string

getResultsFasta

When job is finish, submit a jobid and get the results

  • SOAP Action: urn:FastaWS.wsdl#getResultsFasta
  • Input Message: getResultsFastaRequest
    • JobId
      • string
  • Output Message: getResultsFastaResponse
    • SeqSimilar
      • string
    • Logout
      • string

cancelFasta

When some thing is wrong, cancel your job

  • SOAP Action: urn:FastaWS.wsdl#cancelFasta
  • Input Message: cancelFastaRequest
    • JobId
      • string
  • Output Message: cancelFastaResponse
    • Status
      • string

WSDL Changes

DateDescription of Changes
8th April 2009First Snapshot
FAILED

Test #1: FASTA functionnal test

run a FASTA search with a known sequence
check that the result is a FASTA file with the sequence in the list

Submitted by cblanchet on Thu, 01/15/2009 - 15:20
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