Service version3.0 ws1

Contributor URLhttp://www.cbs.dtu.dk/ws/GenomeAtlas

WSDL URLhttp://www.cbs.dtu.dk/ws/GenomeAtlas/GenomeAtlas_3_0_ws1.wsdl Show/Hide Details

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This Web Service accesses the database records and various tools of the
CBS GenomeAtlas database v3. The records maintained by this database are synchronized regularly
with the Entrez Genome Project (http://www.ncbi.nlm.nih.gov/genomes/lproks.cgi?view=1)

The service allows calculation of various DNA properties (intrinsic curvature, stacking energy, position preference, repeats, and base compositions) as well as extracting proteomes and genome sequences. Various properties like gene count, length, replicon count, replicon names etc can be obtained for each project/genbank accession number.

Test #1: Genome Atlas test workflow

The workflow tests all operations of the service in the following steps:

• Obtain the accession of the shortest genbank accession of a prokaryotic chromosome, having at least 500 annotated CDS
  • Download the genome sequence (getSeq)
  • Download the proteome (getProt)
  • Download all open reading frames (getOrfs)
  • Download annotated features (getFeatures)
  • Calculate the AT content of the genome (DNApropertyRun)
  • Predict all tRNA genes (trnascanRun)
  • Calculate Amino acid usage of proteome (aaUsage)
  • Calculate codon usage (codonUsage)