GenomeMatrix

184

Service version1

Contributor URLhttp://genomematrix.molgen.mpg.de

WSDL URLhttp://genomematrix.molgen.mpg.de/cgi-bin/ws/esoaposti/wsdl PASSED

GenomeMatrix integrates information from diverse experimental data resources for different organisms with respect to user-defined groups of Ensembl genes.

A description of the WSDL service:

GenomeMatrix

Namespace: http://genomematrix.molgen.mpg.de/GM_1_06

GenomeMatrix, http://genomematrix.molgen.mpg.de, integrates information from diverse experimental data resources for different organisms with respect to user-defined groups of Ensembl genes.

Port: GM_port
Location: http://genomematrix.molgen.mpg.de/cgi-bin/ws/esoaposti
Protocol: http://schemas.xmlsoap.org/soap/http
Default Style: document

Operations

GetSpeciesList

lists set of species for which experimental data information is available through GenomeMatrix

SOAP Action: http://genomematrix.molgen.mpg.de/GM_1_06/GetSpeciesList
Input Message: GetSpeciesListRequest
- parameters
  - GetSpeciesList type
Output Message: GetSpeciesListResponse
- parameters
  - GetSpeciesListResponse type
    - GetSpeciesListArray type GetSpeciesListArray
      - species type string

GetEnsIdsByRegion

lists Ensembl IDs within a percental, chromosomal region for a species

SOAP Action: http://genomematrix.molgen.mpg.de/GM_1_06/GetEnsIdsByRegion
Input Message: GetEnsIdsByRegionRequest
- parameters
  - GetEnsIdsByRegion type
    - species type string
    - chromosome type string
    - start type int
    - end type int
Output Message: GetEnsIdsByRegionResponse
- parameters
  - GetEnsIdsByRegionResponse type
    - GetEnsIdsByRegionArray type GetEnsIdsByRegionArray
      - EnsemblID type string

GetDatasets

lists categories - data sets - features for a species

SOAP Action: http://genomematrix.molgen.mpg.de/GM_1_06/GetDatasets
Input Message: GetDatasetsRequest
- parameters
  - GetDatasets type
    - species type string
Output Message: GetDatasetsResponse
- parameters
  - GetDatasetsResponse type
    - GetDatasetsArray type GetDatasetsArray
      - dataset type string

GetExpressionDatasets

Retrieve all available microarray datasets for one species

SOAP Action: http://genomematrix.molgen.mpg.de/GM_1_06/GetExpressionDatasets
Input Message: GetExpressionDatasetsRequest
- parameters
  - GetExpressionDatasets type
    - species type string
Output Message: GetExpressionDatasetsResponse
- parameters
  - GetExpressionDatasetsResponse type
    - GetExpressionDatasetsArray type GetExpressionDatasetsArray
      - microarrayDataset type string

GetPathwayList

Retrieve all available pathway names for one species

SOAP Action: http://genomematrix.molgen.mpg.de/GM_1_06/GetPathwayList
Input Message: GetPathwayListRequest
- parameters
  - GetPathwayList type
    - species type string
Output Message: GetPathwayListResponse
- parameters
  - GetPathwayListResponse type
    - GetPathwayListArray type GetPathwayListArray
      - pathways type string

GetEnsIdsByPathwayName

Retrieve all Ensembl gene identifier related to a pathway

SOAP Action: http://genomematrix.molgen.mpg.de/GM_1_06/GetEnsIdsByPathwayName
Input Message: GetEnsIdsByPathwayNameRequest
- parameters
  - GetEnsIdsByPathwayName type
    - species type string
    - namedlists type string
Output Message: GetEnsIdsByPathwayNameResponse
- parameters
  - GetEnsIdsByPathwayNameResponse type
    - GetEnsIdsByPathwayNameArray type GetEnsIdsByPathwayNameArray
      - EnsemblIDs type string

GetEnsIdsByExpression

Filters a list of Ensembl gene identifier that have a specific expression profile inside an expression data set

SOAP Action: http://genomematrix.molgen.mpg.de/GM_1_06/GetEnsIdsByExpression
Input Message: GetEnsIdsByExpressionRequest
- parameters
  - GetEnsIdsByExpression type
    - species type string
    - filter_val_lower type float
    - filter_val_upper type float
    - categories type string
    - idlist type string
Output Message: GetEnsIdsByExpressionResponse
- parameters
  - GetEnsIdsByExpressionResponse type
    - GetEnsIdsByExpressionArray type GetEnsIdsByExpressionArray
      - EnsemblIDs type string

GetExpressionByEnsIds

Retrieve median normalized expression value(s) inside an expression data set for a given Ensembl gene identifier

SOAP Action: http://genomematrix.molgen.mpg.de/GM_1_06/GetExpressionByEnsIds
Input Message: GetExpressionByEnsIdsRequest
- parameters
  - GetExpressionByEnsIds type
    - species type string
    - categories type string
    - idlist type string
Output Message: GetExpressionByEnsIdsResponse
- parameters
  - GetExpressionByEnsIdsResponse type
    - GetExpressionByEnsIdsArray type GetExpressionByEnsIdsArray
      - expression_values type string

WSDL Changes

Date	Description of Changes
10th April 2009	First Snapshot

Test #1: GetDatasets

This test checks, if data sets can be retrieved from GenomeMatrix.

Test #2: GetPathwayList

This test checks if the list of available pathways can be retrieved from GenomeMatrix.

Test #3: GetExpressionDatasets

This test checks, if expression data sets can be retrieved from GenomeMatrix.

Test #4: GetSpeciesList

This test checks, if the list of available species can be retrieved from GenomeMatrix.

Test #5: GetEnsIdsByRegion

This test checks, if Ensembl identifiers can be retrieved from GenomeMatrix by specifying a chromosomal region.

Test #6: GetEnsIdsByPathwayName

This test checks, if Ensembl identifiers can be retrieved from GenomeMatrix by specifying a pathway.

Test #7: GetEnsIdsByExpression

This test checks, if Ensembl identifiers can be retrieved from GenomeMatrix by specifying expression data sets and expression range.

Test #8: GetExpressionByEnsIds

This test checks, if expression values can be retrieved from GenomeMatrix by specifying expression data sets and Ensembl identifiers.

Submitted by MPIMG_bioinf on Mon, 11/17/2008 - 20:59