GetEntry -- Data retrieval by accession numbers etc -- (DDBJ)

As yet this is untested.

 

Service Description
"getentry" provides an easy way to retrieve entries from various databases at DDBJ.
Please see also the page in detail.
A description of the WSDL service:

GetEntry

Namespace: http://www.themindelectric.com/wsdl/GetEntry/


  • Port: GetEntry
  • Location: http://xml.nig.ac.jp/xddbj/GetEntry
  • Protocol: http://schemas.xmlsoap.org/soap/http
  • Default Style: rpc

Operations

getDDBJEntry

Get DDBJ entry of Flat File Format by Accession Number

  • SOAP Action: getDDBJEntry
  • Input Message: getDDBJEntry0In
    • accession
      • string
  • Output Message: getDDBJEntry0Out
    • Result
      • string

getDDBJCONEntry

Get DDBJ contig entry of Flat File Format by Accession Number

  • SOAP Action: getDDBJCONEntry
  • Input Message: getDDBJCONEntry1In
    • accession
      • string
  • Output Message: getDDBJCONEntry1Out
    • Result
      • string

getDADEntry

Get EMBL entry of Flat File Format by Accession Number//public String getEMBLEntry(String accession) throws Throwable;// Get DAD entry of Flat File Format by Accession Number

  • SOAP Action: getDADEntry
  • Input Message: getDADEntry2In
    • accession
      • string
  • Output Message: getDADEntry2Out
    • Result
      • string

getUNIPROTEntry

Get UNIPROT entry of Flat File Format by Accession Number

  • SOAP Action: getUNIPROTEntry
  • Input Message: getUNIPROTEntry3In
    • accession
      • string
  • Output Message: getUNIPROTEntry3Out
    • Result
      • string

getPDBEntry

Get PDB entry of Flat File Format by Accession Number

  • SOAP Action: getPDBEntry
  • Input Message: getPDBEntry4In
    • accession
      • string
  • Output Message: getPDBEntry4Out
    • Result
      • string

getPRFEntry

Get PRF entry of Flat File Format by Accession Number

  • SOAP Action: getPRFEntry
  • Input Message: getPRFEntry5In
    • accession
      • string
  • Output Message: getPRFEntry5Out
    • Result
      • string

getQVEntry

Get Quality Value of DDBJ entry by Accession Number

  • SOAP Action: getQVEntry
  • Input Message: getQVEntry6In
    • accession
      • string
  • Output Message: getQVEntry6Out
    • Result
      • string

getFASTA_DDBJEntry

Get DDBJ entry of FASTA Format by Accession Number

  • SOAP Action: getFASTA_DDBJEntry
  • Input Message: getFASTA_DDBJEntry7In
    • accession
      • string
  • Output Message: getFASTA_DDBJEntry7Out
    • Result
      • string

getFASTA_DDBJCONEntry

Get DDBJ contig entry of FASTA Format by Accession Number

  • SOAP Action: getFASTA_DDBJCONEntry
  • Input Message: getFASTA_DDBJCONEntry8In
    • accession
      • string
  • Output Message: getFASTA_DDBJCONEntry8Out
    • Result
      • string

getFASTA_DADEntry

Get DAD entry of FASTA Format by Accession Number

  • SOAP Action: getFASTA_DADEntry
  • Input Message: getFASTA_DADEntry9In
    • accession
      • string
  • Output Message: getFASTA_DADEntry9Out
    • Result
      • string

getFASTA_UNIPROTEntry

Get UNIPROT entry of FASTA Format by Accession Number

  • SOAP Action: getFASTA_UNIPROTEntry
  • Input Message: getFASTA_UNIPROTEntry10In
    • accession
      • string
  • Output Message: getFASTA_UNIPROTEntry10Out
    • Result
      • string

getFASTA_PDBEntry

Get PDB entry of FASTA Format by Accession Number

  • SOAP Action: getFASTA_PDBEntry
  • Input Message: getFASTA_PDBEntry11In
    • accession
      • string
  • Output Message: getFASTA_PDBEntry11Out
    • Result
      • string

getFASTA_PRFEntry

Get PRF entry of FASTA Format by Accession Number

  • SOAP Action: getFASTA_PRFEntry
  • Input Message: getFASTA_PRFEntry12In
    • accession
      • string
  • Output Message: getFASTA_PRFEntry12Out
    • Result
      • string

getFASTA_CDSEntry

Get CDS information of DDBJ FASTA entry by Accession Number

  • SOAP Action: getFASTA_CDSEntry
  • Input Message: getFASTA_CDSEntry13In
    • accession
      • string
  • Output Message: getFASTA_CDSEntry13Out
    • Result
      • string

getLocus_DDBJEntry

Get DDBJ entry by Locus information

  • SOAP Action: getLocus_DDBJEntry
  • Input Message: getLocus_DDBJEntry14In
    • locus
      • string
  • Output Message: getLocus_DDBJEntry14Out
    • Result
      • string

getGene_DDBJEntry

Get DDBJ entry by gene name information

  • SOAP Action: getGene_DDBJEntry
  • Input Message: getGene_DDBJEntry15In
    • gene
      • string
  • Output Message: getGene_DDBJEntry15Out
    • Result
      • string

getProd_DDBJEntry

Get DDBJ entry by products information

  • SOAP Action: getProd_DDBJEntry
  • Input Message: getProd_DDBJEntry16In
    • products
      • string
  • Output Message: getProd_DDBJEntry16Out
    • Result
      • string

getPID_DDBJEntry

Get DDBJ entry by PID information

  • SOAP Action: getPID_DDBJEntry
  • Input Message: getPID_DDBJEntry17In
    • pid
      • string
  • Output Message: getPID_DDBJEntry17Out
    • Result
      • string

getClone_DDBJEntry

Get DDBJ entry by clone information

  • SOAP Action: getClone_DDBJEntry
  • Input Message: getClone_DDBJEntry18In
    • clone
      • string
  • Output Message: getClone_DDBJEntry18Out
    • Result
      • string

getPID_DADEntry

Get DAD entry by PID information

  • SOAP Action: getPID_DADEntry
  • Input Message: getPID_DADEntry19In
    • pid
      • string
  • Output Message: getPID_DADEntry19Out
    • Result
      • string

getXML_DDBJEntry

Get DDBJ entry of XML format by Accession Number

  • SOAP Action: getXML_DDBJEntry
  • Input Message: getXML_DDBJEntry20In
    • accession
      • string
  • Output Message: getXML_DDBJEntry20Out
    • Result
      • string

getDDBJVerEntry

Get DDBJ entry of Flat file format by Accession Number with version

  • SOAP Action: getDDBJVerEntry
  • Input Message: getDDBJVerEntry21In
    • accession
      • string
  • Output Message: getDDBJVerEntry21Out
    • Result
      • string

getFASTA_DDBJVerEntry

Get DDBJ entry of FASTA file format by Accession Number with version

  • SOAP Action: getFASTA_DDBJVerEntry
  • Input Message: getFASTA_DDBJVerEntry22In
    • accession
      • string
  • Output Message: getFASTA_DDBJVerEntry22Out
    • Result
      • string

getFASTA_DDBJSeqEntry

Get DDBJ entry of FASTA file format with specified region of Accession Number with version

  • SOAP Action: getFASTA_DDBJSeqEntry
  • Input Message: getFASTA_DDBJSeqEntry23In
    • accession
      • string
    • start
      • string
    • end
      • string
  • Output Message: getFASTA_DDBJSeqEntry23Out
    • Result
      • string

getFASTA_PIDEntry

Get DAD entry of FASTA File Format by PID information

  • SOAP Action: getFASTA_PIDEntry
  • Input Message: getFASTA_PIDEntry24In
    • pid
      • string
  • Output Message: getFASTA_PIDEntry24Out
    • Result
      • string

getDDBJEntryAsync

Get DDBJ entry of Flat File Format by Accession Number

  • SOAP Action: getDDBJEntryAsync
  • Input Message: getDDBJEntryAsync25In
    • accession
      • string
  • Output Message: getDDBJEntryAsync25Out
    • Result
      • string

getDDBJCONEntryAsync

Get DDBJ contig entry of Flat File Format by Accession Number

  • SOAP Action: getDDBJCONEntryAsync
  • Input Message: getDDBJCONEntryAsync26In
    • accession
      • string
  • Output Message: getDDBJCONEntryAsync26Out
    • Result
      • string

getDADEntryAsync

Get EMBL entry of Flat File Format by Accession Number//public String getEMBLEntryAsync(String accession) throws Throwable;// Get DAD entry of Flat File Format by Accession Number

  • SOAP Action: getDADEntryAsync
  • Input Message: getDADEntryAsync27In
    • accession
      • string
  • Output Message: getDADEntryAsync27Out
    • Result
      • string

getUNIPROTEntryAsync

Get UNIPROT entry of Flat File Format by Accession Number

  • SOAP Action: getUNIPROTEntryAsync
  • Input Message: getUNIPROTEntryAsync28In
    • accession
      • string
  • Output Message: getUNIPROTEntryAsync28Out
    • Result
      • string

getPDBEntryAsync

Get PDB entry of Flat File Format by Accession Number

  • SOAP Action: getPDBEntryAsync
  • Input Message: getPDBEntryAsync29In
    • accession
      • string
  • Output Message: getPDBEntryAsync29Out
    • Result
      • string

getPRFEntryAsync

Get PRF entry of Flat File Format by Accession Number

  • SOAP Action: getPRFEntryAsync
  • Input Message: getPRFEntryAsync30In
    • accession
      • string
  • Output Message: getPRFEntryAsync30Out
    • Result
      • string

getQVEntryAsync

Get Quality Value of DDBJ entry by Accession Number

  • SOAP Action: getQVEntryAsync
  • Input Message: getQVEntryAsync31In
    • accession
      • string
  • Output Message: getQVEntryAsync31Out
    • Result
      • string

getFASTA_DDBJEntryAsync

Get DDBJ entry of FASTA Format by Accession Number

  • SOAP Action: getFASTA_DDBJEntryAsync
  • Input Message: getFASTA_DDBJEntryAsync32In
    • accession
      • string
  • Output Message: getFASTA_DDBJEntryAsync32Out
    • Result
      • string

getFASTA_DDBJCONEntryAsync

Get DDBJ contig entry of FASTA Format by Accession Number

  • SOAP Action: getFASTA_DDBJCONEntryAsync
  • Input Message: getFASTA_DDBJCONEntryAsync33In
    • accession
      • string
  • Output Message: getFASTA_DDBJCONEntryAsync33Out
    • Result
      • string

getFASTA_DADEntryAsync

Get DAD entry of FASTA Format by Accession Number

  • SOAP Action: getFASTA_DADEntryAsync
  • Input Message: getFASTA_DADEntryAsync34In
    • accession
      • string
  • Output Message: getFASTA_DADEntryAsync34Out
    • Result
      • string

getFASTA_UNIPROTEntryAsync

Get UNIPROT entry of FASTA Format by Accession Number

  • SOAP Action: getFASTA_UNIPROTEntryAsync
  • Input Message: getFASTA_UNIPROTEntryAsync35In
    • accession
      • string
  • Output Message: getFASTA_UNIPROTEntryAsync35Out
    • Result
      • string

getFASTA_PDBEntryAsync

Get PDB entry of FASTA Format by Accession Number

  • SOAP Action: getFASTA_PDBEntryAsync
  • Input Message: getFASTA_PDBEntryAsync36In
    • accession
      • string
  • Output Message: getFASTA_PDBEntryAsync36Out
    • Result
      • string

getFASTA_PRFEntryAsync

Get PRF entry of FASTA Format by Accession Number

  • SOAP Action: getFASTA_PRFEntryAsync
  • Input Message: getFASTA_PRFEntryAsync37In
    • accession
      • string
  • Output Message: getFASTA_PRFEntryAsync37Out
    • Result
      • string

getFASTA_CDSEntryAsync

Get CDS information of DDBJ FASTA entry by Accession Number

  • SOAP Action: getFASTA_CDSEntryAsync
  • Input Message: getFASTA_CDSEntryAsync38In
    • accession
      • string
  • Output Message: getFASTA_CDSEntryAsync38Out
    • Result
      • string

getLocus_DDBJEntryAsync

Get DDBJ entry by Locus information

  • SOAP Action: getLocus_DDBJEntryAsync
  • Input Message: getLocus_DDBJEntryAsync39In
    • locus
      • string
  • Output Message: getLocus_DDBJEntryAsync39Out
    • Result
      • string

getGene_DDBJEntryAsync

Get DDBJ entry by gene name information

  • SOAP Action: getGene_DDBJEntryAsync
  • Input Message: getGene_DDBJEntryAsync40In
    • gene
      • string
  • Output Message: getGene_DDBJEntryAsync40Out
    • Result
      • string

getProd_DDBJEntryAsync

Get DDBJ entry by products information

  • SOAP Action: getProd_DDBJEntryAsync
  • Input Message: getProd_DDBJEntryAsync41In
    • products
      • string
  • Output Message: getProd_DDBJEntryAsync41Out
    • Result
      • string

getPID_DDBJEntryAsync

Get DDBJ entry by PID information

  • SOAP Action: getPID_DDBJEntryAsync
  • Input Message: getPID_DDBJEntryAsync42In
    • pid
      • string
  • Output Message: getPID_DDBJEntryAsync42Out
    • Result
      • string

getClone_DDBJEntryAsync

Get DDBJ entry by clone information

  • SOAP Action: getClone_DDBJEntryAsync
  • Input Message: getClone_DDBJEntryAsync43In
    • clone
      • string
  • Output Message: getClone_DDBJEntryAsync43Out
    • Result
      • string

getPID_DADEntryAsync

Get DAD entry by PID information

  • SOAP Action: getPID_DADEntryAsync
  • Input Message: getPID_DADEntryAsync44In
    • pid
      • string
  • Output Message: getPID_DADEntryAsync44Out
    • Result
      • string

getXML_DDBJEntryAsync

Get DDBJ entry of XML format by Accession Number

  • SOAP Action: getXML_DDBJEntryAsync
  • Input Message: getXML_DDBJEntryAsync45In
    • accession
      • string
  • Output Message: getXML_DDBJEntryAsync45Out
    • Result
      • string

getDDBJVerEntryAsync

Get DDBJ entry of Flat file format by Accession Number with version

  • SOAP Action: getDDBJVerEntryAsync
  • Input Message: getDDBJVerEntryAsync46In
    • accession
      • string
  • Output Message: getDDBJVerEntryAsync46Out
    • Result
      • string

getFASTA_DDBJVerEntryAsync

Get DDBJ entry of FASTA file format by Accession Number with version

  • SOAP Action: getFASTA_DDBJVerEntryAsync
  • Input Message: getFASTA_DDBJVerEntryAsync47In
    • accession
      • string
  • Output Message: getFASTA_DDBJVerEntryAsync47Out
    • Result
      • string

getFASTA_DDBJSeqEntryAsync

Get DDBJ entry of FASTA file format by Accession Number with version

  • SOAP Action: getFASTA_DDBJSeqEntryAsync
  • Input Message: getFASTA_DDBJSeqEntryAsync48In
    • accession
      • string
    • start
      • string
    • end
      • string
  • Output Message: getFASTA_DDBJSeqEntryAsync48Out
    • Result
      • string

getFASTA_PIDEntryAsync

Get DAD entry of FASTA File Format by PID information

  • SOAP Action: getFASTA_PIDEntryAsync
  • Input Message: getFASTA_PIDEntryAsync49In
    • pid
      • string
  • Output Message: getFASTA_PIDEntryAsync49Out
    • Result
      • string

getBLOCKSEntry

  • SOAP Action: getBLOCKSEntry
  • Input Message: getBLOCKSEntry50In
    • accession
      • string
  • Output Message: getBLOCKSEntry50Out
    • Result
      • string

getBLOCKSEntryAsync

  • SOAP Action: getBLOCKSEntryAsync
  • Input Message: getBLOCKSEntryAsync51In
    • accession
      • string
  • Output Message: getBLOCKSEntryAsync51Out
    • Result
      • string

getENZYMEEntry

  • SOAP Action: getENZYMEEntry
  • Input Message: getENZYMEEntry52In
    • accession
      • string
  • Output Message: getENZYMEEntry52Out
    • Result
      • string

getENZYMEEntryAsync

  • SOAP Action: getENZYMEEntryAsync
  • Input Message: getENZYMEEntryAsync53In
    • accession
      • string
  • Output Message: getENZYMEEntryAsync53Out
    • Result
      • string

getFSSPEntry

  • SOAP Action: getFSSPEntry
  • Input Message: getFSSPEntry54In
    • accession
      • string
  • Output Message: getFSSPEntry54Out
    • Result
      • string

getFSSPEntryAsync

  • SOAP Action: getFSSPEntryAsync
  • Input Message: getFSSPEntryAsync55In
    • accession
      • string
  • Output Message: getFSSPEntryAsync55Out
    • Result
      • string

getHSSPEntry

  • SOAP Action: getHSSPEntry
  • Input Message: getHSSPEntry56In
    • accession
      • string
  • Output Message: getHSSPEntry56Out
    • Result
      • string

getHSSPEntryAsync

  • SOAP Action: getHSSPEntryAsync
  • Input Message: getHSSPEntryAsync57In
    • accession
      • string
  • Output Message: getHSSPEntryAsync57Out
    • Result
      • string

getIMGTEntry

  • SOAP Action: getIMGTEntry
  • Input Message: getIMGTEntry58In
    • accession
      • string
  • Output Message: getIMGTEntry58Out
    • Result
      • string

getIMGTEntryAsync

  • SOAP Action: getIMGTEntryAsync
  • Input Message: getIMGTEntryAsync59In
    • accession
      • string
  • Output Message: getIMGTEntryAsync59Out
    • Result
      • string

getLCOMPOUNDEntry

  • SOAP Action: getLCOMPOUNDEntry
  • Input Message: getLCOMPOUNDEntry60In
    • accession
      • string
  • Output Message: getLCOMPOUNDEntry60Out
    • Result
      • string

getLCOMPOUNDEntryAsync

  • SOAP Action: getLCOMPOUNDEntryAsync
  • Input Message: getLCOMPOUNDEntryAsync61In
    • accession
      • string
  • Output Message: getLCOMPOUNDEntryAsync61Out
    • Result
      • string

getLENZYMEEntry

  • SOAP Action: getLENZYMEEntry
  • Input Message: getLENZYMEEntry62In
    • accession
      • string
  • Output Message: getLENZYMEEntry62Out
    • Result
      • string

getLENZYMEEntryAsync

  • SOAP Action: getLENZYMEEntryAsync
  • Input Message: getLENZYMEEntryAsync63In
    • accession
      • string
  • Output Message: getLENZYMEEntryAsync63Out
    • Result
      • string

getPFAMAEntry

  • SOAP Action: getPFAMAEntry
  • Input Message: getPFAMAEntry64In
    • accession
      • string
  • Output Message: getPFAMAEntry64Out
    • Result
      • string

getPFAMAEntryAsync

  • SOAP Action: getPFAMAEntryAsync
  • Input Message: getPFAMAEntryAsync65In
    • accession
      • string
  • Output Message: getPFAMAEntryAsync65Out
    • Result
      • string

getPFAMBEntry

  • SOAP Action: getPFAMBEntry
  • Input Message: getPFAMBEntry66In
    • accession
      • string
  • Output Message: getPFAMBEntry66Out
    • Result
      • string

getPFAMBEntryAsync

  • SOAP Action: getPFAMBEntryAsync
  • Input Message: getPFAMBEntryAsync67In
    • accession
      • string
  • Output Message: getPFAMBEntryAsync67Out
    • Result
      • string

getPFAMHMMFSEntry

  • SOAP Action: getPFAMHMMFSEntry
  • Input Message: getPFAMHMMFSEntry68In
    • accession
      • string
  • Output Message: getPFAMHMMFSEntry68Out
    • Result
      • string

getPFAMHMMFSEntryAsync

  • SOAP Action: getPFAMHMMFSEntryAsync
  • Input Message: getPFAMHMMFSEntryAsync69In
    • accession
      • string
  • Output Message: getPFAMHMMFSEntryAsync69Out
    • Result
      • string

getPFAMHMMLSEntry

  • SOAP Action: getPFAMHMMLSEntry
  • Input Message: getPFAMHMMLSEntry70In
    • accession
      • string
  • Output Message: getPFAMHMMLSEntry70Out
    • Result
      • string

getPFAMHMMLSEntryAsync

  • SOAP Action: getPFAMHMMLSEntryAsync
  • Input Message: getPFAMHMMLSEntryAsync71In
    • accession
      • string
  • Output Message: getPFAMHMMLSEntryAsync71Out
    • Result
      • string

getPFAMSEEDEntry

  • SOAP Action: getPFAMSEEDEntry
  • Input Message: getPFAMSEEDEntry72In
    • accession
      • string
  • Output Message: getPFAMSEEDEntry72Out
    • Result
      • string

getPFAMSEEDEntryAsync

  • SOAP Action: getPFAMSEEDEntryAsync
  • Input Message: getPFAMSEEDEntryAsync73In
    • accession
      • string
  • Output Message: getPFAMSEEDEntryAsync73Out
    • Result
      • string

getPRINTSEntry

  • SOAP Action: getPRINTSEntry
  • Input Message: getPRINTSEntry74In
    • accession
      • string
  • Output Message: getPRINTSEntry74Out
    • Result
      • string

getPRINTSEntryAsync

  • SOAP Action: getPRINTSEntryAsync
  • Input Message: getPRINTSEntryAsync75In
    • accession
      • string
  • Output Message: getPRINTSEntryAsync75Out
    • Result
      • string

getPRODOMEntry

  • SOAP Action: getPRODOMEntry
  • Input Message: getPRODOMEntry76In
    • accession
      • string
  • Output Message: getPRODOMEntry76Out
    • Result
      • string

getPRODOMEntryAsync

  • SOAP Action: getPRODOMEntryAsync
  • Input Message: getPRODOMEntryAsync77In
    • accession
      • string
  • Output Message: getPRODOMEntryAsync77Out
    • Result
      • string

getPROSITEDOCEntry

  • SOAP Action: getPROSITEDOCEntry
  • Input Message: getPROSITEDOCEntry78In
    • accession
      • string
  • Output Message: getPROSITEDOCEntry78Out
    • Result
      • string

getPROSITEDOCEntryAsync

  • SOAP Action: getPROSITEDOCEntryAsync
  • Input Message: getPROSITEDOCEntryAsync79In
    • accession
      • string
  • Output Message: getPROSITEDOCEntryAsync79Out
    • Result
      • string

getPROSITEEntry

  • SOAP Action: getPROSITEEntry
  • Input Message: getPROSITEEntry80In
    • accession
      • string
  • Output Message: getPROSITEEntry80Out
    • Result
      • string

getPROSITEEntryAsync

  • SOAP Action: getPROSITEEntryAsync
  • Input Message: getPROSITEEntryAsync81In
    • accession
      • string
  • Output Message: getPROSITEEntryAsync81Out
    • Result
      • string

getSWISSPFAMEntry

  • SOAP Action: getSWISSPFAMEntry
  • Input Message: getSWISSPFAMEntry82In
    • accession
      • string
  • Output Message: getSWISSPFAMEntry82Out
    • Result
      • string

getSWISSPFAMEntryAsync

  • SOAP Action: getSWISSPFAMEntryAsync
  • Input Message: getSWISSPFAMEntryAsync83In
    • accession
      • string
  • Output Message: getSWISSPFAMEntryAsync83Out
    • Result
      • string

getSwissProtEntry

  • SOAP Action: getSwissProtEntry
  • Input Message: getSwissProtEntry84In
    • accession
      • string
  • Output Message: getSwissProtEntry84Out
    • Result
      • string

getSwissProtEntryAsync

  • SOAP Action: getSwissProtEntryAsync
  • Input Message: getSwissProtEntryAsync85In
    • accession
      • string
  • Output Message: getSwissProtEntryAsync85Out
    • Result
      • string

getTrEMBLEntry

  • SOAP Action: getTrEMBLEntry
  • Input Message: getTrEMBLEntry86In
    • accession
      • string
  • Output Message: getTrEMBLEntry86Out
    • Result
      • string

getTrEMBLEntryAsync

  • SOAP Action: getTrEMBLEntryAsync
  • Input Message: getTrEMBLEntryAsync87In
    • accession
      • string
  • Output Message: getTrEMBLEntryAsync87Out
    • Result
      • string

WSDL Changes

DateDescription of Changes
8th April 2009First Snapshot