GlobPlot

118

Service version1.0

WSDL URLhttp://globplot.embl.de/webservice/globplot.wsdl PASSED

GlobPlot performs intrinsic protein disorder, domain and globularity prediction for a query protein sequence.

the web service consists of one method:

runGlobPlotter

Reference:
GlobPlot: Exploring Protein Sequences for Globularity and Disorder
Rune Linding, Robert B. Russell, Victor Neduva and Toby J. Gibson
(Nucleic Acids Research, 2003, Vol. 31, No. 13 3701-3708)

URL: globplot

A description of the WSDL service:

GlobPlotter

Namespace: http://globplot.embl.de/GlobPlotter

This WSDL file describe the GlobPlot Web Service. It performs intrinsic protein disorder, domain and globularity prediction. GlobPlot: Exploring Protein Sequences for Globularity and Disorder Rune Linding, Robert B. Russell, Victor Neduva and Toby J. Gibson (Nucleic Acids Research, 2003, Vol. 31, No. 13 3701-3708) http://globplot.embl.de http://globplot.embl.de/clients/globPlotClient.txt

Port: GlobPlotter
Location: http://luna.embl.de:8080/axis2/services/GlobPlotter
Protocol: http://schemas.xmlsoap.org/soap/http
Default Style: document

Operations

runGlobPlotter

This operation runs the GlobPlot application directly.

SOAP Action: http://globplot.embl.de/GlobPlot/runGlobPlotter
Input Message: runGlobPlotterRequestMsg
- parameters
  - runGlobPlotter type
    - sequenceIdentifier type string
    - querySequence type string
    - propensity
    - includeMainGraphics
    - disorderFrames_minimumPeakWidth
    - disorderFrames_maximumJoinDistance
    - globularityFrames_minimumDomainLength
    - globularityFrames_maximumLinkerLength
    - smoothingSettings_firstDerivativeSavitzkyGolayFrame
    - smoothingSettings_secondDerivativeSavitzkyGolayFrame
    - titleOfGraphics
    - performSmartPfamDomainPredictionInGraphics
    - includeRawPlotInMainGraphics
    - includeDydxPlotGraphics
    - includeSmoothedResultFile
    - includeDisorderGlobularDomainRangesFile
    - includeDydxPlotFile
Output Message: runGlobPlotterResponseMsg
- parameters
  - runGlobPlotterResponse type
    - GlobPlotPrediction type GlobPlotPredictionType
      - sequence type sequence
        identifier
        sequence
      - prediction type gff
        gff_record type
        seqname
        source
        feature
        start type integer
        end type integer
        score type string
        strand
        frame
        comment
        seqname
        source
        feature
        start type integer
        end type integer
        score type string
        strand
        frame
        comment
      - image type image
        comment type string
        encoding
        MIMEtype
        content type string
      - file type document
        comment type string
        encoding
        MIMEtype
        content type string

WSDL Changes

Date	Description of Changes
8th April 2009	First Snapshot

Test #1: GlobPlot_test

The GlobPlot webservice consists of one method called runGlobPlotter
The runGlobPlot.py script tests the functionality of this web-service.
The results from the GlobPlot webservice are deterministic so the script checks for exact values for the output.

Submitted by kate on Wed, 10/15/2008 - 12:37