JACOP/FuncNet

FAILED
219
Service version1.0
Contributor URLhttp://funcnet.eu
WSDL URLhttp://myhits.isb-sib.ch/doc/FuncNet.wsdlPASSED

Brief Overview

JACOP/FuncNet provides an implementation of the FuncNet prediction service defined at http://funcnet.eu

Background

The JACOP/FuncNet Web service reuses a majority of the technologies and methods that were previously developed for the JACOP tool that is available via the MyHits web server (http://myhits.isb-sib.ch/cgi-bin/jacop). However, several enhancements and technology changes have been made for the JACOP/FuncNet Web service such as an optimised version of hierarchical clustering as well as p-value calculation for pairwise scores, creation of a SOAP-based Web service layer.

A description of the WSDL service:

JacopService

Namespace: http://funcnet.eu/FuncNet_1_0/

  • Port: JacopPort
  • Location: http://myhits.isb-sib.ch/cgi-bin/jacop_funcnet
  • Protocol: http://schemas.xmlsoap.org/soap/http
  • Default Style: document

Operations

ScorePairwiseRelations

This method runs the prediction algorithm on two sets of proteins (identified by UniProt primary accessions), one query set and one reference set. The predictor performs a pairwise comparison between each query-reference pair.

  • SOAP Action: http://funcnet.eu/Jacop/ScorePairwiseRelations
  • Input Message: ScorePairwiseRelationsRequest
    • parameters
      • ScorePairwiseRelations type
        • proteins1 type ProteinList
          • p type string
          • proteins2 type ProteinList
            • p type string
      • Output Message: ScorePairwiseRelationsResponse
        • parameters
          • ScorePairwiseRelationsResponse type
            • s type PairwiseScore
              • p1 type string
                • p2 type string
                  • rs type double
                    • pv type double

              WSDL Changes

              DateDescription of Changes
              8th April 2009First Snapshot
              FAILED

              Test #1: JACOP/FuncNet Test Client

              Usage: funcnet-test [-h]

              The program connects to a FuncNet Predictor service
              and returns a p-value and a raw score for each protein pair.

              The program does not require any option and connects by
              default to the following service: http://myhits.isb-sib.ch/cgi-bin/jacop_funcnet
              To change the service URL, modify the variable 'proxy' in the script.

              -h print this help message.

              Submitted by heinz on Wed, 11/26/2008 - 16:53
              »