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Contributor URLhttp://www.bioinfo.se/palign/

WSDL URLhttp://wsdl.sbc.su.se/wsdl/palign.wsdl Show/Hide Details

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The ProteinALIGNment (Palign) programs are a set of programs for sequence searches. They can perform standard dynamic programming, heuristic fasta like searches and profile-profile alignments. Palign can be used for many type of alignment problems and can:

1. Align two sequences and search a database with a sequence
2. Align a sequence and a profile
3. Include and combine secondary structure information into the alignments
4. Read sequences, profiles etc in many formats
5. Perform profile-profile searches/alignments using different algorithms

Test #1: palign test

The script tests to align two short sequences.