PatSearch

1642

Contributor URLhttp://www.ba.itb.cnr.it/BIG/PatSearch/

WSDL URLhttp://spank.ba.itb.cnr.it:8080/soaplab2/typed/services/itba.patsearch?wsdl PASSED

PatSearch is a flexible and fast pattern matcher able to search for specific combinations of oligonucleotide consensus sequences, secondary structure elements and position-weight matrices. It can also allow for mismatches/mispairings below a user fixed threshold.

A description of the WSDL service:

patsearchService

Namespace: http://soaplab.itb.ba.cnr.it/itba/patsearch

Pattern matcher to search combination

Port: patsearchPort
Location: http://spank.ba.itb.cnr.it:8080/soaplab2/typed/services/itba.patsearch
Protocol: http://schemas.xmlsoap.org/soap/http
Default Style: document

Operations

run

starts a job and returns its job identifier that can be used by the getStatus and the getResults methods

SOAP Action:
Input Message: run
- run
  - run type appInputs
    - input_direct_data type string
    - input_url type string
    - command_direct_data type string
    - command_url type string
    - matchseq type long
    - maxmatch type long
    - maxtotalmatch type long
    - COMPLEMENT type boolean
    - OVERLAP type boolean
    - PROTEIN type boolean
Output Message: runResponse
- runResponse
  - runResponse type string

runAndWaitFor

starts a job, waits until it is completed and returns the job results

SOAP Action:
Input Message: runAndWaitFor
- runAndWaitFor
  - runAndWaitFor type appInputs
    - input_direct_data type string
    - input_url type string
    - command_direct_data type string
    - command_url type string
    - matchseq type long
    - maxmatch type long
    - maxtotalmatch type long
    - COMPLEMENT type boolean
    - OVERLAP type boolean
    - PROTEIN type boolean
Output Message: runAndWaitForResponse
- runAndWaitForResponse
  - runAndWaitForResponse type appResults
    - report type string
    - detailed_status type long
    - output type string
    - output_url type string
    - sequences type string
    - sequences_url type string
    - match_seq type string
    - match_seq_url type string
    - total_sequences type string
    - total_sequences_url type string

WSDL Changes

Date	Description of Changes
6th May 2009	First Snapshot
7th May 2009	Service namespace changed to: http://pattern.itbws.it/patsearch A port has been added at location: http://spank.ba.itb.cnr.it:8080/soaplab2/services/itba.patsearch
23rd May 2009	Service namespace changed to: http://soaplab.itb.ba.cnr.it/itba/patsearch Port named patsearchPort has new location: http://spank.ba.itb.cnr.it:8080/soaplab2/typed/services/itba.patsearch Operation named run - Input message part type has changed Operation named runAndWaitFor - Input message part type has changed Operation named runAndWaitFor - Output message part type has changed

Test #1: PatSearch_test

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