ProDomCG_evoscen

ProdomCG_evoscen is a set of webservices allowing to browse ProDom-CG267 evolutionary scenarios. It includes
- GetScenarioProdom : takes an ProDom-CG family (CG + 6 characters) and returns its evolutionary scenario as a string of (number of nodes) characters (absence = 1, presence = 2)
- GetPresentFamiliesProdom : takes a taxID present in ProdomCG and returns a list of ProdomCG families present at this node
Please see ProDom help page and ProdomCG description if needed.
We have a perl script available here to run this webservice from your computer. Please install SOAP Lite before.
A description of the WSDL service:
ProdomCG_evoscen
Namespace: http://prodom.prabi.fr/ProdomCG_evoscen
Operations
GetPresentFamiliesProdom
Takes an NCBI taxID present in ProdomCG and returns the domain families present at this node
- SOAP Action: http://prodom.prabi.fr/ProdomCG_evoscen#GetPresentFamiliesProdom
- Input Message: GetPresentFamiliesProdomMsg
- inputWrapper
- GetPresentFamiliesProdom type
- taxID type string
- taxID type string
- GetPresentFamiliesProdom type
- inputWrapper
- Output Message: GetPresentFamiliesProdomResponseMsg
- outputWrapper
- GetPresentFamiliesProdomResponse type
- FamiliesList type string
- FamiliesList type string
- GetPresentFamiliesProdomResponse type
- outputWrapper
GetScenarioProdom
Takes a ProdomCG family and returns its evolutionary scenario as a string of 394 (number of nodes) characters (1=absence, 2=presence)
- SOAP Action: http://prodom.prabi.fr/ProdomCG_evoscen#GetScenarioProdom
- Input Message: GetScenarioProdomMsg
- inputWrapper
- GetScenarioProdom type
- ProdomFamily type string
- ProdomFamily type string
- GetScenarioProdom type
- inputWrapper
- Output Message: GetScenarioProdomResponseMsg
- outputWrapper
- GetScenarioProdomResponse type
- ScenarioText type string
- ScenarioText type string
- GetScenarioProdomResponse type
- outputWrapper
WSDL Changes
| Date | Description of Changes |
| 11th May 2009 | First Snapshot |

Test #1: ProDomCG_evoscenTest
This is a test for Hogenom_evoscen set of webservices. It uses perl and SOAPlite. It includes tests for the following webservices :
- GetScenario : output must be of a given length (number of nodes)
- GetPresentFamiliesProdom : output must be 1160 elements long (the query is taxID 55529)

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It is as well possible to
It is as well possible to search for orthologous genes in a wide range of taxons. Thus HOGENOM is particularly useful for comparative sequence analysis, phylogeny and molecular evolution studies. More generaly, HOGENOM gives an overall view of what is known about a peculiar gene family.
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