ProDomCG_evoscen

1871

Service version1.0

Contributor URLhttp://prodom.prabi.fr/prodom/2006.1/documentation/prodomCG_evoscen.html

WSDL URLhttp://prodom.prabi.fr/prodom/2006.1/wsdl/prodomCG_evoscen.wsdl PASSED

ProdomCG_evoscen is a set of webservices allowing to browse ProDom-CG267 evolutionary scenarios. It includes

GetScenarioProdom : takes an ProDom-CG family (CG + 6 characters) and returns its evolutionary scenario as a string of (number of nodes) characters (absence = 1, presence = 2)
GetPresentFamiliesProdom : takes a taxID present in ProdomCG and returns a list of ProdomCG families present at this node

Please see ProDom help page and ProdomCG description if needed.
We have a perl script available here to run this webservice from your computer. Please install SOAP Lite before.

A description of the WSDL service:

ProdomCG_evoscen

Namespace: http://prodom.prabi.fr/ProdomCG_evoscen

Port: ProdomCG_evoscenPort
Location: http://prodom.prabi.fr/prodom/2006.1/cgi-bin/prodomCG_evoscen.pl
Protocol: http://schemas.xmlsoap.org/soap/http
Default Style: document

Operations

GetPresentFamiliesProdom

Takes an NCBI taxID present in ProdomCG and returns the domain families present at this node

SOAP Action: http://prodom.prabi.fr/ProdomCG_evoscen#GetPresentFamiliesProdom
Input Message: GetPresentFamiliesProdomMsg
- inputWrapper
  - GetPresentFamiliesProdom type
    - taxID type string
Output Message: GetPresentFamiliesProdomResponseMsg
- outputWrapper
  - GetPresentFamiliesProdomResponse type
    - FamiliesList type string

GetScenarioProdom

Takes a ProdomCG family and returns its evolutionary scenario as a string of 394 (number of nodes) characters (1=absence, 2=presence)

SOAP Action: http://prodom.prabi.fr/ProdomCG_evoscen#GetScenarioProdom
Input Message: GetScenarioProdomMsg
- inputWrapper
  - GetScenarioProdom type
    - ProdomFamily type string
Output Message: GetScenarioProdomResponseMsg
- outputWrapper
  - GetScenarioProdomResponse type
    - ScenarioText type string

WSDL Changes

Date	Description of Changes
11th May 2009	First Snapshot

Test #1: ProDomCG_evoscenTest

This is a test for Hogenom_evoscen set of webservices. It uses perl and SOAPlite. It includes tests for the following webservices :

GetScenario : output must be of a given length (number of nodes)
GetPresentFamiliesProdom : output must be 1160 elements long (the query is taxID 55529)

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It is as well possible to search for orthologous genes in a wide range of taxons. Thus HOGENOM is particularly useful for comparative sequence analysis, phylogeny and molecular evolution studies. More generaly, HOGENOM gives an overall view of what is known about a peculiar gene family.

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