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Contributor URLhttps://gbio-pbil.ibcp.fr/ws

WSDL URLhttp://gbio-pbil.ibcp.fr/media/wsdl/SSearchWS.wsdl Show/Hide Details

WS-I Compliance Errors/Warnings

ERRORS:

• The use attribute of a soapbind:body, soapbind:fault, soapbind:header and soapbind:headerfault does not have value of "literal".

WARNINGS:

• SOAPBody ({http://schemas.xmlsoap.org/wsdl/soap/}body):required=nulluse=encodedencodingStyles=[http://schemas.xmlsoap.org/soap/encoding/]namespaceURI=urn:SSearch_Service

Description

Find sequence similarity with the SSEARCH algorithm between a query sequence of protein and a reference database of proteins.

Usage

You need to provide the following input arguments to the service:

• “Sequence” : the query sequence
• “SeqDatabase” : the protein sequence database to compare the query to. The value of this argument should be an identifier get among the ones of the available databases on the remote server (swiss-prot, trembl, pdb).

The outputs of the service are:

• “Status”: the status of the query
• “JobId”: the JobId in the remote service environment
• “SeqSimilar”: the sequences similar to the query identified by the service. The results are sent in the raw output format of the native tool.

More help about the usage of this Web service can be find on the IBCP Web Services home at http://gbio-pbil.ibcp.fr/ws

Test #1: SSearch functionnal test

run a SSearch with a known sequence
check that the result is a SSearch file with the sequence in the list