WSFasta

As yet this is untested.
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Contributor URLhttp://www.ebi.ac.uk/Tools/webservices/services/fasta
WSDL URLhttp://www.ebi.ac.uk/Tools/webservices/wsdl/WSFasta.wsdlFAILED Show/Hide Details

Sequence similarity search using the FASTA suite:

  • FASTA - protein vs. protein database and nucleotide vs. nucleotide database
  • FASTF - mixed peptides vs. protein database
  • FASTS - short peptides vs. protein database
  • FASTX - nucleotide vs. protein database
  • FASTY - nucleotide vs. protein database
  • SSEARCH - protein vs. protein database using Smith-Waterman
  • TFASTX - protein vs. nucleotide database
  • TFASTY - protein vs. nucleotide database
A description of the WSDL service:

WSFastaService

Namespace: http://www.ebi.ac.uk/WSFasta

  • Port: WSFasta
  • Location: http://www.ebi.ac.uk/Tools/es/ws-servers/WSFasta
  • Protocol: http://schemas.xmlsoap.org/soap/http
  • Default Style: rpc

Operations

poll

Get the results of a job (see http://www.ebi.ac.uk/Tools/webservices/services/fasta#poll_jobid_type)

  • SOAP Action: http://www.ebi.ac.uk/WSFasta#poll
  • Input Message: pollRequest
    • jobid
      • string
    • type
      • string
  • Output Message: pollResponse
    • output
      • base64Binary

runFasta

Submit a FASTA analysis job (see http://www.ebi.ac.uk/Tools/webservices/services/fasta#runfasta_params_content)

  • SOAP Action: http://www.ebi.ac.uk/WSFasta#runFasta
  • Input Message: runFastaRequest
    • params
      • inputParams
    • content
      • WSArrayofData
  • Output Message: runFastaResponse
    • jobid
      • string

checkStatus

Get the status of a submited job (see http://www.ebi.ac.uk/Tools/webservices/services/fasta#checkstatus_jobid)

  • SOAP Action: http://www.ebi.ac.uk/WSFasta#checkStatus
  • Input Message: statusRequest
    • jobid
      • string
  • Output Message: statusResponse
    • status
      • string

getResults

Get the available result types for a completed job (see http://www.ebi.ac.uk/Tools/webservices/services/fasta#getresults_jobid)

  • SOAP Action: http://www.ebi.ac.uk/WSFasta#getResults
  • Input Message: resultsRequest
    • jobid
      • string
  • Output Message: resultsResponse
    • results
      • WSArrayofFile

polljob

Deprecated (see http://www.ebi.ac.uk/Tools/webservices/services/fasta#polljob_jobid_outformat)

  • SOAP Action: http://www.ebi.ac.uk/WSFasta#polljob
  • Input Message: polljobRequest
    • jobid
      • string
    • outformat
      • string
  • Output Message: polljobResponse
    • result
      • string

doFasta

Deprecated (see http://www.ebi.ac.uk/Tools/webservices/services/fasta#doFasta_params_content)

  • SOAP Action: http://www.ebi.ac.uk/WSFasta#doFasta
  • Input Message: doFastaRequest
    • params
      • inputParams
    • content
      • base64Binary
  • Output Message: doFastaResponse
    • result
      • base64Binary

getIds

Get the hit identifiers from the analysis result (see http://www.ebi.ac.uk/Tools/webservices/services/fasta#getids_jobid)

  • SOAP Action: http://www.ebi.ac.uk/WSFasta#getIds
  • Input Message: getIdsRequest
    • jobid
      • string
  • Output Message: getIdsResponse
    • result
      • ArrayOf_xsd_string

getMatrices

Get the list of available scoring matrices (see http://www.ebi.ac.uk/Tools/webservices/services/fasta#getmatrices)

  • SOAP Action: http://www.ebi.ac.uk/WSFasta#getMatrices
  • Input Message: getMatricesRequest
    • Output Message: getMatricesResponse
      • result
        • WSArrayofoutData

    getPrograms

    Get the list of available analysis programs (see http://www.ebi.ac.uk/Tools/webservices/services/fasta#getprograms)

    • SOAP Action: http://www.ebi.ac.uk/WSFasta#getPrograms
    • Input Message: getProgramsRequest
      • Output Message: getProgramsResponse
        • result
          • WSArrayofoutData

      getDatabases

      Get the list of available databases (see http://www.ebi.ac.uk/Tools/webservices/services/fasta#getdatabases)

      • SOAP Action: http://www.ebi.ac.uk/WSFasta#getDatabases
      • Input Message: getDatabasesRequest
        • Output Message: getDatabasesResponse
          • result
            • WSArrayofoutData

        getStats

        Get the list of available statistical methods (see http://www.ebi.ac.uk/Tools/webservices/services/fasta#getstats)

        • SOAP Action: http://www.ebi.ac.uk/WSFasta#getStats
        • Input Message: getStatsRequest
          • Output Message: getStatsResponse
            • result
              • WSArrayofoutData

          getFilters

          Get the list of available input sequence filtering methods (see http://www.ebi.ac.uk/Tools/webservices/services/fasta#getfilters)

          • SOAP Action: http://www.ebi.ac.uk/WSFasta#getFilters
          • Input Message: getFiltersRequest
            • Output Message: getFiltersResponse
              • result
                • WSArrayofoutData

            WSDL Changes

            DateDescription of Changes
            8th April 2009First Snapshot
            Submitted by Hamish McWilliam on Fri, 11/14/2008 - 13:05
            »