WSMPsrch

1873

Service version1

Contributor URLhttp://www.ebi.ac.uk/Tools/webservices/services/mpsrch

WSDL URLhttp://www.ebi.ac.uk/Tools/webservices/wsdl/WSMPsrch.wsdl FAILED

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WS-I Compliance Errors/Warnings

ERRORS:

WSDL definition does not conform to the schema located at http://schemas.xmlsoap.org/wsdl/soap/2003-02-11.xsd for some element using the WSDL-SOAP binding namespace, or does not conform to the schema located at http://schemas.xmlsoap.org/wsdl/2003-02-11.xsd for some element using the WSDL namespace.
An Array declaration uses - restricts or extends - the soapenc:Array type, or the wsdl:arrayType attribute is used in the type declaration.
A wsdl:types element contained a data type definition that is not an XML schema definition.

WARNINGS:

Exception:org.xml.sax.SAXException: Error: cvc-complex-type.2.4.a: Invalid content was found starting with element 'documentation'. One of '{"http://schemas.xmlsoap.org/wsdl/":part}' is expected.at org.wsi.xml.XMLUtils$ErrHandler.error(XMLUtils.java:1128)at org.apache.xerces.util.ErrorHandlerWrapper.error(Unknown Source)at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source)at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source)at org.apache.xerces.impl.xs.XMLSchemaValidator$XSIErrorReporter.reportError(Unknown Source)at org.apache.xerces.impl.xs.XMLSchemaValidator.reportSchemaError(Unknown Source)at org.apache.xerces.impl.xs.XMLSchemaValidator.handleStartElement(Unknown Source)at org.apache.xerces.impl.xs.XMLSchemaValidator.startElement(Unknown Source)at org.apache.xerces.impl.XMLNSDocumentScannerImpl.scanStartElement(Unknown Source)at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(Unknown Source)at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source)at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)at org.apache.xerces.parsers.XMLParser.parse(Unknown Source)at org.apache.xerces.parsers.DOMParser.parse(Unknown Source)at org.wsi.xml.jaxp.DocumentBuilderImpl.parse(DocumentBuilderImpl.java:148)at org.wsi.xml.XMLUtils.parseXML(XMLUtils.java:585)at org.wsi.xml.XMLUtils.parseXMLDocument(XMLUtils.java:173)at org.wsi.test.profile.validator.impl.wsdl.BP2703.validate(BP2703.java:88)at org.wsi.test.profile.validator.impl.BaseValidatorImpl.processAssertions(BaseValidatorImpl.java:319)at org.wsi.test.profile.validator.impl.wsdl.WSDLValidatorImpl.processDefinitionAssertions(WSDLValidatorImpl.java:592)at org.wsi.test.profile.validator.impl.wsdl.WSDLValidatorImpl.validate(WSDLValidatorImpl.java:182)at org.wsi.test.analyzer.BasicProfileAnalyzer.validateWSDL(BasicProfileAnalyzer.java:376)at org.wsi.test.analyzer.BasicProfileAnalyzer.validateConformance(BasicProfileAnalyzer.java:209)at net.embraceregistry.wsianalyzer.WsiAnalyzerExecutionImpl.executeAnalyzer(WsiAnalyzerExecutionImpl.java:288)at net.embraceregistry.wsianalyzer.ExecuateAnalyzer.main(ExecuateAnalyzer.java:25)
{http://www.ebi.ac.uk/WSMPsrch}inputParams,{http://www.ebi.ac.uk/WSMPsrch}WSArrayofFile,{http://www.ebi.ac.uk/WSMPsrch}data,{http://www.ebi.ac.uk/WSMPsrch}ArrayOf_xsd_string,{http://www.ebi.ac.uk/WSMPsrch}WSArrayofData
The inline schema uses an element or type from the SOAP encoding namespace but the namespace has not been imported. The SOAP encoding namespace should be imported with an import statement before it is used.

MPsrch is a biological sequence sequence comparison tool that implements the true Smith and Waterman algorithm. It allows an rigorous search in a reasonable computational time. MPsrch utilises an exhaustive algorithm, which is recognised as the most sensitive sequence comparison method available, whereas BLAST and FASTA utilise a heuristic one. As a consequence, MPsrch is capable of identifying hits in cases where BLAST and FASTA fail and also reports fewer false-positive hits.

A description of the WSDL service:

WSMPsrchService

Namespace: http://www.ebi.ac.uk/WSMPsrch

Port: WSMPsrch
Location: http://www.ebi.ac.uk/Tools/es/ws-servers/WSMPsrch
Protocol: http://schemas.xmlsoap.org/soap/http
Default Style: rpc

Operations

poll

SOAP Action: http://www.ebi.ac.uk/WSMPsrch#poll
Input Message: pollRequest
- jobid
  - string
- type
  - string
Output Message: pollResponse
- output
  - base64Binary

runMPsrch

SOAP Action: http://www.ebi.ac.uk/WSMPsrch#runMPsrch
Input Message: runMPsrchRequest
- params
  - inputParams
- content
  - WSArrayofData
Output Message: runMPsrchResponse
- jobid
  - string

checkStatus

SOAP Action: http://www.ebi.ac.uk/WSMPsrch#checkStatus
Input Message: statusRequest
- jobid
  - string
Output Message: statusResponse
- status
  - string

getResults

SOAP Action: http://www.ebi.ac.uk/WSMPsrch#getResults
Input Message: resultsRequest
- jobid
  - string
Output Message: resultsResponse
- results
  - WSArrayofFile

WSDL Changes

Date	Description of Changes
12th May 2009	First Snapshot

Submitted by ericnzuo on Mon, 05/11/2009 - 16:25