WSxVO

PASSED
1843
Service version1.0.20090508
Contributor URLhttp://biocomp.cnb.csic.es/VisualOmics/
WSDL URLhttp://biocomp.cnb.csic.es:8092/axis2/services/WSxVO?wsdlFAILED Show/Hide Details

Available services:
# WSxVO - The starting point. Function dsn returns a list of available Web Services (data sources).
# WSxVO_EMAP_Reference - Reference for terms from EMAP-OBO digital atlas of mouse development. Contains a set of terms from the for mouse embryo (EMAP) and mouse adult (MA) ontologies plus the mouse central nervous system (GENSAT) vocabulary describing anatomical structures.
# WSxVO_MGI_Reference - Reference for gene identifiers. It has as entry points the whole set of genes from MGI-GXD, EMAGE, GENSAT and OMIM databases
# WSxVO_EMAGE_Features - Annotations for Gene expression from EMAGE related to anatomic terms from EMAP-OBO
# WSxVO_GXD_Features - Annotations for Gene expression from MGI-GXD related to anatomic terms from EMAP-OBO
# WSxVO_GENSAT_Features - Annotations for mouse brain gene expression from GENSAT
# WSxVO_OMIM_Features - Annotations from pathologies in OMIM
# WSxVO_Symatlas_Features - Annotations for tissue gene expression from SymATLAS
# WSxVO_KEGG_Features - Annotations from KEGG pathways
# WSxVO_MTB_Features - Annotations for MTB mouse tumor database
# WSxVO_BMSA_Features - Annotations for rat brain gene expression from BAMS

Visual Omics is a project in which the multidimensional image field gives access to a new world of information that can be integrated with the wealth of genomic and proteomic data. This kind of integration is a challenging task because it requires the development of new ways to access public databases of spatial genomics and proteomics information, and to deal with complex multidimensional image information and, possibly, a manner to combine these images and volumes with traditional annotations.

Visual Genomics:

The first part of the project is based on the Edinburgh Mouse Atlas Project (EMAP). This project has been working for more than a decade in the creation of a digital atlas of mouse development and a database that spatially maps in situ gene expression (EMAGE database). Visual Genomics project tries to bring together the multidimensional imaging and the genomics fields to provide an integrated system.

The Web Services for Visual Omics (WSxVO) system is a client/server system to provide information about gene expression in a standardized manner.

This is a first implementation (using Axis2) translating the REST services into SOAP-RPC services.

A description of the WSDL service:

WSxVO

Namespace: http://wsxvo/axis/bcu/cnb/csic/es/

  • Port: WSxVOSOAP11port_http
  • Location: http://localhost:8080/axis2/services/WSxVO
  • Protocol: http://schemas.xmlsoap.org/soap/http
  • Default Style: document

Operations

dsn

  • SOAP Action: urn:dsn
  • Input Message: dsnRequest
    • Output Message: dsnResponse
      • parameters
        • dsnResponse type
          • return type string

      getVersion

      • SOAP Action: urn:getVersion
      • Input Message: getVersionRequest
        • Output Message: getVersionResponse
          • parameters
            • getVersionResponse type
              • return type string
          • Port: WSxVOSOAP12port_http
          • Location: http://localhost:8080/axis2/services/WSxVO
          • Protocol: http://schemas.xmlsoap.org/soap/http
          • Default Style: document

          Operations

          dsn

          • SOAP Action: urn:dsn
          • Input Message: dsnRequest
            • Output Message: dsnResponse
              • parameters
                • dsnResponse type
                  • return type string

              getVersion

              • SOAP Action: urn:getVersion
              • Input Message: getVersionRequest
                • Output Message: getVersionResponse
                  • parameters
                    • getVersionResponse type
                      • return type string
                  • Port: WSxVOHttpport
                  • Location: http://localhost:8080/axis2/services/WSxVO
                  • Protocol:
                  • Default Style:

                  Operations

                  dsn

                  • SOAP Action:
                  • Input Message: dsnRequest
                    • Output Message: dsnResponse
                      • parameters
                        • dsnResponse type
                          • return type string

                      getVersion

                      • SOAP Action:
                      • Input Message: getVersionRequest
                        • Output Message: getVersionResponse
                          • parameters
                            • getVersionResponse type
                              • return type string

                          WSDL Changes

                          DateDescription of Changes
                          11th May 2009First Snapshot
                          PASSED

                          Test #1: WSxVO_dsn_test

                          ###################################################
                          ### Testing script for WSxVO services
                          ### registered at http://www.embraceregistry.net/
                          ###
                          ### author: jrmacias@cnb.csic.es
                          ### date: 20090512
                          ###
                          ### Simply make a dsn query to the Web Service and
                          ### wait for proper response. It evaluates success
                          ### just if the name of the services are found in
                          ### the response
                          ###################################################

                          Submitted by jrmacias on Sun, 05/10/2009 - 23:33
                          »