Services Summary

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MultAlin multiple alignment (CNRS IBCP) cblanchet 13/01/09 EMBRACE, multiple alignment, protein sequence 92 %
PcProf predict physico-chemical profiles of proteins (CNRS IBCP) cblanchet 15/01/09 EMBRACE, prediction, protein sequence 92 %
CONSENSUS of protein secondary structure prediction (CNRS IBCP) cblanchet 15/01/09 EMBRACE, prediction, protein sequence 91 %
HitKeeper heinz 27/08/08 EMBRACE, protein sequence 91 %
EMBOSS garnier soaplab 03/04/09 EMBOSS, EMBRACE, protein 2d structure, soaplab, Other 90 %
EMBOSS vectorstrip soaplab 05/05/09 edit, EMBOSS, EMBRACE, soaplab, Other 90 %
EMBOSS helixturnhelix soaplab 03/04/09 EMBOSS, EMBRACE, protein 2d structure, soaplab, Other 89 %
EMBOSS patmatdb soaplab 05/05/09 EMBOSS, EMBRACE, protein motifs, soaplab, Other 89 %
EMBOSS seqmatchall soaplab 07/04/09 alignment local, EMBOSS, EMBRACE, soaplab, Other 89 %
EMBOSS union soaplab 05/05/09 edit, EMBOSS, EMBRACE, soaplab, Other 89 %
EMBOSS vrnasubopt soaplab 07/05/09 EMBOSS, EMBRACE, nucleic rna folding, soaplab, Other 89 %
FASTA protein similarity search (CNRS IBCP) cblanchet 15/01/09 EMBRACE, protein sequence 89 %
GOR III protein secondary structure prediction (CNRS IBCP) cblanchet 15/01/09 EMBRACE, prediction, protein sequence 89 %
NetOGlyc - Prediction of o-GalNAc (mucin type) glycosylation sites in mammalian proteins rapacki 23/04/09 EMBRACE, Mammalia, Mucin type O-glycosylation sites, CBS-DTU, protein sequence 89 %
EMBOSS backtranseq soaplab 03/04/09 EMBOSS, EMBRACE, nucleic translation, soaplab, Other 88 %
EMBOSS cpgplot soaplab 03/04/09 EMBOSS, EMBRACE, nucleic cpg islands, soaplab, Other 88 %
EMBOSS cusp soaplab 03/04/09 Codon, EMBOSS, EMBRACE, nucleic codon usage, soaplab, Other 88 %
EMBOSS sigcleave soaplab 03/04/09 EMBOSS, EMBRACE, protein motifs, soaplab, Other 88 %
EMBOSS tfscan soaplab 03/04/09 EMBOSS, EMBRACE, nucleic transcription, soaplab, Other 88 %
RNAmmer pfhallin 19/09/08 DNA sequence, EMBRACE, gene prediction, Hidden Markov Model, HMM, rRNA, RNA sequence 88 %
EMBOSS antigenic soaplab 03/04/09 EMBOSS, EMBRACE, protein motifs, soaplab, Other 86 %
EMBOSS silent soaplab 03/04/09 EMBOSS, EMBRACE, nucleic restriction, soaplab, Other 86 %
NetCTL - Prediction of CTL epitopes in protein sequences rapacki 23/04/09 EMBRACE, Epitope, Immunology, MHC binding, T cell, CBS-DTU, protein sequence 86 %
PREDATOR protein secondary structure prediction (CNRS IBCP) cblanchet 15/01/09 EMBRACE, prediction, protein sequence 86 %
The ELM Resource Conservation Filter kate 15/10/08 conservation, EMBRACE, eukaryotic, linear, motif, regulatory, protein sequence, EMBL 86 %
SIMPA protein secondary structure prediction (CNRS IBCP) cblanchet 15/01/09 EMBRACE, prediction, protein sequence 83 %
EMBOSS backtranambig soaplab 03/04/09 EMBOSS, EMBRACE, nucleic translation, soaplab, Other 82 %
EMBOSS digest soaplab 03/04/09 EMBOSS, EMBRACE, protein motifs, soaplab, Other 80 %
The ELM Resource Structure Filter kate 21/04/09 accessibility, EMBRACE, eukaryotic, ligand domain, linear, motif, regulatory, secondary structure, protein sequence, EMBL 80 %
blastProDom lauranne.duquenne 20/10/08 EMBRACE, protein sequence, INRIA-UCBL 78 %
EMBOSS charge soaplab 03/04/09 EMBOSS, EMBRACE, protein composition, soaplab, Other 78 %
EMBOSS pepcoil soaplab 03/04/09 EMBOSS, EMBRACE, protein 2d structure, soaplab, Other 78 %
NetPhos - Prediction of generic phosphorylation sites in eukaryotic proteins rapacki 23/04/09 Generic predictions, Kinase specific predictions, Other, phosphorylation, CBS-DTU, protein sequence 75 %
EMBOSS tmap soaplab 03/04/09 EMBOSS, EMBRACE, protein 2d structure, soaplab, Other 73 %
Genome Atlas pfhallin 06/05/09 Databases of complete prokaryotic genome sequences, DNA sequence, EMBRACE, Genome Atlases, CBS-DTU 73 %
CLUSTAL W multiple alignment (CNRS IBCP) cblanchet 19/09/08 EMBRACE, multiple alignment, protein sequence 71 %
NetGlycate - Prediction of glycation of ε amino groups of lysines in mammalian proteins rapacki 23/04/09 EMBRACE, Glycation, Mammalia, protein sequence, CBS-DTU, protein sequence 71 %
GeneWiz pfhallin 08/05/09 DNA properties, DNA sequence, EMBRACE, Genome Visualization, CBS-DTU 70 %
NetChop - Prediction of proteasomal cleavages (MHC ligands) rapacki 23/04/09 MHC class I pathway, Other, Proteasomal cleavage, CBS-DTU, protein sequence 67 %
SIDDbase pfhallin 06/05/09 DNA sequence, EMBRACE, SIDD - databases and tool for estimates of stress-induced DNA duplex destabilization, CBS-DTU 58 %
Pcons.net stockholm_dbb 10/12/08 EMBRACE, protein structure, Quality assessment, molecular structure 50 %
SignalP - Prediction of signal peptide and cleavage sites in gram+, gram- and eukaryotic amino acid sequences rapacki 07/05/09 EMBRACE, Hidden Markov Model, neural network, signal peptides, CBS-DTU, protein sequence 50 %
JACOP/FuncNet heinz 26/11/08 EMBRACE, FuncNet, prediction, protein sequence 47 %
Pfrag stockholm_dbb 12/12/08 EMBRACE, Homology modelling, protein structure, molecular structure 45 %
Pdb fix stockholm_dbb 12/12/08 EMBRACE, protein structure, molecular structure 38 %
SHRIMP stockholm_dbb 12/12/08 EMBRACE, Hidden Markov Model, membrane protein, pairwise alignment, protein sequence 38 %
TOPCONS stockholm_dbb 11/12/08 EMBRACE, membrane protein, prediction, protein, structure, topology, protein sequence 38 %
mprap stockholm_dbb 20/04/10 accessibility, EMBRACE, protein sequence 36 %
BLASTatlas pfhallin 06/05/09 DNA sequence, EMBRACE, CBS-DTU, protein sequence 31 %
PRODIV-TMHMM stockholm_dbb 15/12/08 EMBRACE, membrane protein, protein sequence, protein structure, topology, protein sequence 31 %