Services Summary

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Genome Atlas pfhallin 06/05/09 Databases of complete prokaryotic genome sequences, DNA sequence, EMBRACE, Genome Atlases, CBS-DTU 96 %
SignalP - Prediction of signal peptide and cleavage sites in gram+, gram- and eukaryotic amino acid sequences rapacki 07/05/09 EMBRACE, Hidden Markov Model, neural network, signal peptides, CBS-DTU, protein sequence 94 %
EMBOSS ftreedist soaplab 07/05/09 EMBOSS, EMBRACE, phylogeny consensus, soaplab, Other 93 %
EMBOSS pepstats soaplab 03/04/09 EMBOSS, EMBRACE, protein composition, soaplab, Other 93 %
EMBOSS pscan soaplab 05/05/09 EMBOSS, EMBRACE, protein motifs, soaplab, Other 93 %
EMBOSS fdnapenny soaplab 07/05/09 EMBOSS, EMBRACE, phylogeny molecular sequence, soaplab, Other 92 %
EMBOSS palindrome soaplab 03/04/09 EMBOSS, EMBRACE, nucleic repeats, soaplab, Other 92 %
EMBOSS tcode soaplab 03/04/09 EMBOSS, EMBRACE, nucleic gene finding, soaplab, Other 91 %
GeneWiz pfhallin 08/05/09 DNA properties, DNA sequence, EMBRACE, Genome Visualization, CBS-DTU 90 %
phosphoELMdb kate 14/10/08 EMBRACE, eukaryotic, phosphorylation, protein sequence, EMBL 90 %
MkDom2 lauranne.duquenne 02/06/09 Clustering, EMBRACE, prodom, protein domain prediction, protein sequence, INRIA-UCBL 89 %
ProDomCG_evoscen lauranne.duquenne 11/05/09 EMBRACE, protein domain, protein domain evolution, protein sequence, INRIA-UCBL 89 %
blastProDom lauranne.duquenne 20/10/08 EMBRACE, protein sequence, INRIA-UCBL 88 %
EMBOSS vrnacofoldconc soaplab 07/05/09 EMBOSS, EMBRACE, nucleic rna folding, soaplab, Other 88 %
Hogenom_tree lauranne.duquenne 11/05/09 EMBRACE, hogenom, Other, INRIA-UCBL 88 %
NetCTL - Prediction of CTL epitopes in protein sequences rapacki 23/04/09 EMBRACE, Epitope, Immunology, MHC binding, T cell, CBS-DTU, protein sequence 88 %
SIDDbase pfhallin 06/05/09 DNA sequence, EMBRACE, SIDD - databases and tool for estimates of stress-induced DNA duplex destabilization, CBS-DTU 88 %
RNAmmer pfhallin 19/09/08 DNA sequence, EMBRACE, gene prediction, Hidden Markov Model, HMM, rRNA, RNA sequence 82 %
NetOGlyc - Prediction of o-GalNAc (mucin type) glycosylation sites in mammalian proteins rapacki 23/04/09 EMBRACE, Mammalia, Mucin type O-glycosylation sites, CBS-DTU, protein sequence 80 %
Hogenom lauranne.duquenne 23/10/08 EMBRACE, protein sequence, INRIA-UCBL 78 %
The ELM Resource Structure Filter kate 21/04/09 accessibility, EMBRACE, eukaryotic, ligand domain, linear, motif, regulatory, secondary structure, protein sequence, EMBL 78 %
WHAT IF Web Services maarten 28/01/10 BioSapiens, EMBRACE, molecular structure, protein sequence, Other 78 %
BLASTatlas pfhallin 06/05/09 DNA sequence, EMBRACE, CBS-DTU, protein sequence 75 %
The ELM Resource Conservation Filter kate 15/10/08 conservation, EMBRACE, eukaryotic, linear, motif, regulatory, protein sequence, EMBL 75 %
COILS predict protein coiled-coil regions (CNRS IBCP) cblanchet 15/01/09 EMBRACE, prediction, protein sequence 29 %
FASTA protein similarity search (CNRS IBCP) cblanchet 15/01/09 EMBRACE, protein sequence 27 %
DSC protein secondary structure prediction (CNRS IBCP) cblanchet 15/01/09 EMBRACE, prediction, secondary structure, protein sequence 25 %
CONSENSUS of protein secondary structure prediction (CNRS IBCP) cblanchet 15/01/09 EMBRACE, prediction, protein sequence 20 %
PcProf predict physico-chemical profiles of proteins (CNRS IBCP) cblanchet 15/01/09 EMBRACE, prediction, protein sequence 20 %
CLUSTAL W multiple alignment (CNRS IBCP) cblanchet 19/09/08 EMBRACE, multiple alignment, protein sequence 13 %
GOR III protein secondary structure prediction (CNRS IBCP) cblanchet 15/01/09 EMBRACE, prediction, protein sequence 11 %
GOR IV protein secondary structure prediction (CNRS IBCP) cblanchet 15/01/09 EMBRACE, prediction, protein sequence 11 %
GOR I protein secondary structure prediction (CNRS IBCP) cblanchet 15/01/09 EMBRACE, prediction, secondary structure, protein sequence 8 %
AffyDEGFinder taavi 19/11/08 affymetrix, chipster, differentially expressed genes, EMBRACE, example, finding, microarray, Other 0 %
AIDA document retrieval service mroos 09/09/08 Other, Text mining, text mining 0 %
BioMart - REST and SOAP biomart 04/11/08 DNA sequence, EMBRACE, protein sequence, Other, EBI 0 %
BLAST (DDBJ) dave 07/11/08 blast, Other, protein sequence, UMAN 0 %
BLAST blastp protein similarity search (CNRS IBCP) cblanchet 19/09/08 EMBRACE, sequence similarity, protein sequence 0 %
BLASTn at SIB (nucleotide query sequence(s) against a nucleotide database) smoretti 04/11/08 blast, DNA sequence, e-value, EMBRACE, evalue, NCBI, nucleotide, pairwise alignment, search, SIB, Similarity 0 %
BLASTp at SIB (protein query sequence(s) against protein database) smoretti 04/11/08 blast, e-value, EMBRACE, evalue, NCBI, pairwise alignment, protein, search, SIB, Similarity, swissprot, trembl, uniprot, uniref, protein sequence 0 %
BLASTx at SIB (nucleotide query sequence(s) translated in all reading frames against a protein sequence database) smoretti 04/11/08 blast, DNA sequence, e-value, EMBRACE, evalue, NCBI, nucleotide, pairwise alignment, protein, search, SIB, Similarity 0 %
Calculate Molecular Similarity. egonw 04/11/08 cheminformatics, Other, Similarity, tanimoto, molecular structure 0 %
Calculate QSAR descriptors. egonw 04/11/08 cheminformatics, Other, QSAR, molecular structure 0 %
CATH/Gene3D Database Lookup Services sillitoe 09/01/09 domain, EC, EMBRACE, FunCat, GO, HMM, KEGG, lookup, mapping, PDB, sequence family, superfamily, uniprot, molecular structure, protein sequence, Other 0 %
CATH/Gene3D HMMScan (draft WSDL) andrew.clegg 20/11/08 CATH, EMBRACE, Gene3D, Hidden Markov Model, HMM, protein, search, sequence, Similarity, protein sequence 0 %
CATHEDRAL (Draft WSDL) andrew.clegg 20/11/08 CATH, EMBRACE, protein, search, Similarity, structure, molecular structure 0 %
CMC itb-bari 06/05/09 Clustering, microarray, non-parametric, Other, Other, ITB 0 %
CODA (using CATH domains) andrew.clegg 04/11/08 comparison, domain architecture, domain fission, domain fusion, EMBRACE, evolution, FuncNet, function, prediction, protein, sequence, protein sequence 0 %
CODA (using Pfam domains) andrew.clegg 04/11/08 comparison, domain architecture, domain fission, domain fusion, EMBRACE, evolution, FuncNet, function, prediction, protein, sequence, protein sequence 0 %
ConsensusPathDB pathway analysis MPIMG_bioinf 25/04/12 EMBRACE, expression data analysis, pathway analysis, pathway integration, ppi, Other, MPIMG 0 %