Other

This service converts a network in gml, gdl, KGML or tab-delimited format into a network in gml, gdl, pajek, tab-delimited, dot or VisML format.

The KEGG network provider constructs organism-specific metabolic networks from the KEGG PATHWAY KGML files.

The pathway extraction service connects groups of seed nodes in a weighted graph.

The pathfinding service enumerates the k shortest paths between a set of source and target nodes in a weighted graph. It is a wrapper of REA developped by Jimenez and Marzal.

About CorEx: How to infer from transcription data, which sets of transcription factors regulate a given group of genes, is a difficult task. Tackling this problem generally involves three steps: i) define the group of genes, ii) identify common transcription factor binding sites (TFBS) in the promoters of those genes, iii) test the identified TFBS for enrichment/sharing. CorEx offers web service that addresses each of these steps used either jointly or separately.

* Correlation mapping using multidimensional scaling (MDS)