DNA sequence

Part of the Regulatory Sequence Analysis Tools (RSAT).
Returns upstream, downstream, intronic, exonic, UTR or gene sequences for a list of genes from the EnsEMBL database.

Ab initio gene prediction tool that returns the gene predictions in GFF format (GFF version 2). Runs GeneId version 1.2

TRAP is a program that detects the binding affinity of a Transcription Factors(TFs) for a DNA sequence.

Given a list of Gene sequences (or Ensembl IDs), the program calculates the binding affinity of a
list of TF's (Transfac matrices) for the supplied Genes.

The user is returned a list of TF's ranked by affinity score for each gene supplied.

The RNAmmer 1.2 server predicts 5s/8s, 16s/18s, and 23s/28s ribosomal RNA in full genome sequences. This page is the entry of the CBS Prediction Server for RNAmmer. RNAmmer is available also as a Web Service described by the following WSDL file. Please read the instructions on the RNAmmer Web Services section.
This pages allows academic users to download RNAmmer

Part of the Regulatory Sequence Analysis Tools (RSAT).
Mask redundant fragments in a sequence.