Text mining

engineDB is a repository for precalculated functional analogouse gene products using the gene ontology (GO) annotation to calculate the functional analogy by semantic similarity.

The GO data used are from the GO database version 08_09.

engineDB_08_09 is a web service accessing the engineDB searching for two gene groducts (UniProt primary accession number) the functional similarity indicating the coresponding raw score and p-value (see http://funcnet.eu)

Firestar: predicting functional residues from structural templates and alignment reliability.

$Rev: 20 $

SLR (http://www.ebi.ac.uk/goldman/SLR/) is a program to detect sites in coding DNA that are unusually conserved and/or unusually variable (that is, evolving under purify or positive selection) by analysing the pattern of changes for an alignment of sequences on an evolutionary tree. It is developed by 'Goldman Group' (EMBL - European Bioinformatics Institute).

$Rev: 20 $

targetp predicts the subcellular location of eukaryotic protein sequences.

$Rev: 20 $

signalp predicts the presence and location of signal peptide cleavage sites in amino acid sequences from different organisms: Gram-positive bacteria, Gram-negative bacteria, and eukaryotes.

$Rev: 20 $