gene prediction

The EasyGene 1.0 server produces a list of predicted genes given a sequence of prokaryotic
DNA. Each prediction is attributed with a significance score (R-value) indicating how likely
it is to be just a non-coding open reading frame rather than a real gene. The user needs
only to specify the organism hosting the query sequence. Two more parameters (start codon
leniency and R-value cutoff) have default values which may be altered if needed.

Alongside this Web Service EasyGene method is also implemented as an interactive server at: http://www.cbs.dtu.dk/services/EasyGene/

Ab initio gene prediction tool that returns the gene predictions in GFF format (GFF version 2). Runs GeneId version 1.2

The RNAmmer 1.2 server predicts 5s/8s, 16s/18s, and 23s/28s ribosomal RNA in full genome sequences. This page is the entry of the CBS Prediction Server for RNAmmer. RNAmmer is available also as a Web Service described by the following WSDL file. Please read the instructions on the RNAmmer Web Services section.
This pages allows academic users to download RNAmmer