SSearch functionnal test
This is a test of the SSearch protein similarity search (CNRS IBCP) service.
Test filesDownload the files for this test
Test runRun test now
Support reference#266-267
run a SSearch with a known sequence
check that the result is a SSearch file with the sequence in the list
Show/hide recent test logs
view log 5 days agoFAILED
Test began: 2012-02-01 07:49:20 Test ended: 2012-02-01 07:53:13 Result : Test failure ------ stderr and stdout follow ------ Traceback (most recent call last): File "./gbiowstest-ssearch.py", line 92, inDownload this log...open(fn_control,'w').write(resp._SeqSimilar) IOError: [Errno 13] Permission denied: 'control-seq001.SSearch'
view log 2 weeks agoFAILED
Test began: 2012-01-24 20:14:54 Test ended: 2012-01-24 20:21:24 Result : Test failure ------ stderr and stdout follow ------ Traceback (most recent call last): File "./gbiowstest-ssearch.py", line 79, inDownload this log...resp = port.checkStatusSSearch(req) File "/Library/WebServer.embraceregistry/Documents/sites/all/modules/ws_registry/registry/266/267/package/SSearch_Service_client.py", line 49, in checkStatusSSearch self.binding.Send(None, None, request, soapaction="urn:SSearchWS.wsdl#checkStatusSSearch", encodingStyle="http://schemas.xmlsoap.org/soap/encoding/", **kw) File "build/bdist.macosx-10.5-i386/egg/ZSI/client.py", line 291, in Send File "/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/httplib.py", line 679, in connect raise socket.error, msg socket.error: (60, 'Operation timed out')
view log 2 weeks agoFAILED
Test began: 2012-01-24 05:39:36 Test ended: 2012-01-24 05:43:29 Result : Test failure ------ stderr and stdout follow ------ Traceback (most recent call last): File "./gbiowstest-ssearch.py", line 92, inDownload this log...open(fn_control,'w').write(resp._SeqSimilar) IOError: [Errno 13] Permission denied: 'control-seq001.SSearch'
view log 2 weeks agoFAILED
Test began: 2012-01-23 01:05:58 Test ended: 2012-01-23 01:09:48 Result : Test failure ------ stderr and stdout follow ------ Traceback (most recent call last): File "./gbiowstest-ssearch.py", line 92, inDownload this log...open(fn_control,'w').write(resp._SeqSimilar) IOError: [Errno 13] Permission denied: 'control-seq001.SSearch'
view log 4 weeks agoFAILED
Test began: 2012-01-10 18:17:31 Test ended: 2012-01-10 18:21:30 Result : Test failure ------ stderr and stdout follow ------ Traceback (most recent call last): File "./gbiowstest-ssearch.py", line 92, inDownload this log...open(fn_control,'w').write(resp._SeqSimilar) IOError: [Errno 13] Permission denied: 'control-seq001.SSearch'
view log 4 weeks agoFAILED
Test began: 2012-01-08 05:45:25 Test ended: 2012-01-08 05:49:19 Result : Test failure ------ stderr and stdout follow ------ Traceback (most recent call last): File "./gbiowstest-ssearch.py", line 92, inDownload this log...open(fn_control,'w').write(resp._SeqSimilar) IOError: [Errno 13] Permission denied: 'control-seq001.SSearch'
view log 1 month agoFAILED
Test began: 2012-01-02 18:11:01 Test ended: 2012-01-02 18:15:00 Result : Test failure ------ stderr and stdout follow ------ Traceback (most recent call last): File "./gbiowstest-ssearch.py", line 92, inDownload this log...open(fn_control,'w').write(resp._SeqSimilar) IOError: [Errno 13] Permission denied: 'control-seq001.SSearch'
view log 1 month agoFAILED
Test began: 2011-12-31 04:58:16 Test ended: 2011-12-31 05:02:09 Result : Test failure ------ stderr and stdout follow ------ Traceback (most recent call last): File "./gbiowstest-ssearch.py", line 92, inDownload this log...open(fn_control,'w').write(resp._SeqSimilar) IOError: [Errno 13] Permission denied: 'control-seq001.SSearch'
view log 1 month agoFAILED
Test began: 2011-12-29 01:15:10 Test ended: 2011-12-29 01:19:07 Result : Test failure ------ stderr and stdout follow ------ Traceback (most recent call last): File "./gbiowstest-ssearch.py", line 92, inDownload this log...open(fn_control,'w').write(resp._SeqSimilar) IOError: [Errno 13] Permission denied: 'control-seq001.SSearch'
view log 2 months agoFAILED
Test began: 2011-12-07 17:21:31 Test ended: 2011-12-07 17:25:24 Result : Test failure ------ stderr and stdout follow ------ Traceback (most recent call last): File "./gbiowstest-ssearch.py", line 92, inDownload this log...open(fn_control,'w').write(resp._SeqSimilar) IOError: [Errno 13] Permission denied: 'control-seq001.SSearch'
This test consists of the following files:
__MACOSX/
._gbiowstest-ssearch.py (binary file)
benchy_seq001.seq
>Unknow sequence for GBIO Web Services test ( C Blanchet, 14 jan 2009) MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLSPSVISDNYGGAKALTHKILANSAR RRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACRSG LAARRRCCRGYLLTRRYPWKGLCAGCRRWV
control-seq001.SSearch
./ssearch35 -Q -O /zebre_scratch/gbiows//fe631c61-59dd-11de-b206-000c296a8ac2/ssearch.out /zebre_scratch/gbiows//fe631c61-59dd-11de-b206-000c296a8ac2/ssearch.in /zebre_scratch/db/sq/swiss-prot/current/sprot.fas
SSEARCH searches a sequence data bank version 35.03 Feb. 18, 2008
Please cite:
T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197;
W.R. Pearson (1991) Genomics 11:635-650
Query: Unknow, 270 aa
1>>>Unknow sequence for GBIO Web Services test ( C Blanchet, 14 270 aa - 270 aa
Library: /zebre_scratch/db/sq/swiss-prot/current/sprot.fas 125286976 residues in 349480 sequences
opt E()
< 20 433 0:=
22 2 0:= one = represents 548 library sequences
24 9 0:=
26 16 7:*
28 61 79:*
30 390 481:*
32 1443 1861:===*
34 4106 5047:======== *
36 9026 10365:================= *
38 15299 17129:============================ *
40 22146 23894:========================================= *
42 28282 29207:==================================================== *
44 31241 32219:==========================================================*
46 32825 32815:===========================================================*
48 31742 31417:=========================================================*
50 28929 28668:====================================================*
52 25847 25204:=============================================*==
54 22441 21529:=======================================*=
56 18957 17983:================================*==
58 15781 14764:==========================*==
60 12393 11959:=====================*=
62 10458 9588:=================*==
64 8115 7625:=============*=
66 6612 6027:==========*==
68 4962 4741:========*=
70 3820 3715:======*
72 3152 2903:=====*
74 2372 2263:====*
76 1831 1762:===*
78 1540 1369:==*
80 1140 1063:=*=
82 881 813:=*
84 751 644:=*
86 532 498:*
88 391 386:* inset = represents 6 library sequences
90 306 298:*
92 293 231:* :======================================*=
94 195 179:* :=============================*===
96 175 138:* :======================*=======
98 111 107:* :=================*=
100 79 83:* :=============*
102 58 64:* :==========*
104 55 50:* :========*=
106 40 38:* :======*
108 29 30:* :====*
110 29 23:* :===*=
112 18 18:* :==*
114 14 14:* :==*
116 10 11:* :=*
118 3 8:* :=*
>120 139 6:* :*=======================
125286976 residues in 349480 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2823+/-0.000194; mu= 10.5323+/- 0.011
mean_var=61.9402+/-12.887, 0's: 73 Z-trim: 91 B-trim: 1998 in 1/64
Lambda= 0.162963
statistics sampled from 60000 to 349346 sequences
Kolmogorov-Smirnov statistic: 0.0237 (N=29) at 44
Algorithm: Smith-Waterman (PGopt) (6.0 Mar 2007)
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
The best scores are: s-w bits E(349480)
P07760|RBTR_KLEAE Ribitol operon repressor - Klebs ( 270) 1789 426.8 8.2e-119
P37076|SCRR_KLEPN Sucrose operon repressor - Klebs ( 334) 331 84.1 1.6e-15
P37077|SCRR_SALTY Sucrose operon repressor - Salmo ( 334) 326 82.9 3.5e-15
P0A2P8|FRUR_SALTY Fructose repressor - Salmonella ( 334) 284 73.0 3.3e-12
P0A2P9|FRUR_SALTI Fructose repressor - Salmonella ( 334) 284 73.0 3.3e-12
P0ACP4|FRUR_SHIFL Fructose repressor - Shigella fl ( 334) 284 73.0 3.3e-12
P0ACP2|FRUR_ECOL6 Fructose repressor - Escherichia ( 334) 284 73.0 3.3e-12
P0ACP1|FRUR_ECOLI Fructose repressor - Escherichia ( 334) 284 73.0 3.3e-12
P0ACP3|FRUR_ECO57 Fructose repressor - Escherichia ( 334) 284 73.0 3.3e-12
P37947|DEGA_BACSU HTH-type transcriptional regulat ( 337) 283 72.8 4e-12
P18811|MALI_ECOLI Maltose regulon regulatory prote ( 342) 283 72.8 4e-12
Q6GFX2|CCPA_STAAR Probable catabolite control prot ( 329) 280 72.1 6.3e-12
Q8NW33|CCPA_STAAW Probable catabolite control prot ( 329) 277 71.4 1e-11
Q6G8J1|CCPA_STAAS Probable catabolite control prot ( 329) 277 71.4 1e-11
P99175|CCPA_STAAN Probable catabolite control prot ( 329) 277 71.4 1e-11
P67655|CCPA_STAAM Probable catabolite control prot ( 329) 277 71.4 1e-11
Q5HF38|CCPA_STAAC Probable catabolite control prot ( 329) 277 71.4 1e-11
Q56194|CCPA_STAXY Probable catabolite control prot ( 329) 265 68.5 7.2e-11
Q5HNH3|CCPA_STAEQ Probable catabolite control prot ( 329) 263 68.1 1e-10
Q8CNV8|CCPA_STAES Probable catabolite control prot ( 329) 263 68.1 1e-10
P0ACP6|GNTR_ECOL6 HTH-type transcriptional regulat ( 331) 262 67.8 1.2e-10
P0ACP5|GNTR_ECOLI HTH-type transcriptional regulat ( 331) 262 67.8 1.2e-10
O07329|CCPA_STRMU Probable catabolite control prot ( 333) 243 63.4 2.6e-09
Q05954|Y4158_STRCO Uncharacterized HTH-type transc ( 340) 243 63.4 2.7e-09
P43472|SCRR_PEDPE Sucrose operon repressor - Pedio ( 326) 241 62.9 3.6e-09
P25144|CCPA_BACSU Catabolite control protein A - B ( 334) 234 61.2 1.2e-08
P39343|IDNR_ECOLI HTH-type transcriptional regulat ( 332) 229 60.1 2.6e-08
P25748|GALS_ECOLI HTH-type transcriptional regulat ( 346) 224 58.9 6.1e-08
Q54430|SCRR_STRMU Sucrose operon repressor - Strep ( 320) 222 58.4 7.8e-08
Q9K6K2|RBSR_BACHD Ribose operon repressor - Bacill ( 331) 219 57.7 1.3e-07
Q48544|PEPR_LACDL HTH-type transcriptional regulat ( 333) 219 57.7 1.3e-07
P41030|GALS_SALTY HTH-type transcriptional regulat ( 340) 214 56.5 3e-07
P46828|CCPA_BACME Glucose-resistance amylase regul ( 332) 212 56.1 4.1e-07
P50844|KDGR_BACSU HTH-type transcriptional regulat ( 339) 212 56.1 4.2e-07
P36673|TRER_ECOLI HTH-type transcriptional regulat ( 315) 202 53.7 2e-06
O87590|CELR_THEFU HTH-type transcriptional regulat ( 340) 202 53.7 2.2e-06
P03024|GALR_ECOLI HTH-type transcriptional regulat ( 343) 202 53.7 2.2e-06
Q04939|SACR_LACLA Sucrose operon repressor - Lacto ( 318) 201 53.5 2.4e-06
P0ACQ1|RBSR_ECOL6 Ribose operon repressor - Escher ( 330) 200 53.3 2.9e-06
P0ACQ2|RBSR_ECO57 Ribose operon repressor - Escher ( 330) 200 53.3 2.9e-06
P0ACQ3|RBSR_SHIFL Ribose operon repressor - Shigel ( 330) 200 53.3 2.9e-06
P0ACQ0|RBSR_ECOLI Ribose operon repressor - Escher ( 330) 200 53.3 2.9e-06
P74866|GALR_SALTY HTH-type transcriptional regulat ( 342) 200 53.3 3e-06
P36674|TRER_SALTY HTH-type transcriptional regulat ( 315) 199 53.0 3.3e-06
Q9CF41|RBSR_LACLA Ribose operon repressor - Lactoc ( 327) 197 52.6 4.7e-06
Q8DAQ5|PURR_VIBVU HTH-type transcriptional repress ( 334) 193 51.6 9.2e-06
Q7MJ57|PURR_VIBVY HTH-type transcriptional repress ( 334) 193 51.6 9.2e-06
P03023|LACI_ECOLI Lactose operon repressor - Esche ( 360) 193 51.6 9.9e-06
Q6LQB9|PURR_PHOPR HTH-type transcriptional repress ( 334) 189 50.7 1.8e-05
Q4QL70|PURR_HAEI8 HTH-type transcriptional repress ( 336) 189 50.7 1.8e-05
P77615|YCJW_ECOLI Uncharacterized HTH-type transcr ( 332) 188 50.4 2.1e-05
Q87QW9|PURR_VIBPA HTH-type transcriptional repress ( 334) 188 50.4 2.1e-05
P37517|CCPB_BACSU Catabolite control protein B - B ( 311) 187 50.2 2.3e-05
P36944|RBSR_BACSU Ribose operon repressor - Bacill ( 326) 187 50.2 2.4e-05
P96158|MALI_VIBFU Maltose regulon regulatory prote ( 137) 180 48.6 3.1e-05
Q45831|REGA_CLOSA HTH-type transcriptional regulat ( 332) 181 48.8 6.4e-05
P46456|PURR_HAEIN HTH-type transcriptional repress ( 336) 181 48.8 6.5e-05
Q7VL44|PURR_HAEDU HTH-type transcriptional repress ( 339) 181 48.8 6.6e-05
Q0I4B4|PURR_HAES1 HTH-type transcriptional repress ( 333) 180 48.6 7.6e-05
Q9CN88|PURR_PASMU HTH-type transcriptional repress ( 334) 179 48.3 9e-05
P0A4T1|MALR_STRPN HTH-type transcriptional regulat ( 328) 177 47.8 0.00012
P0A4T2|MALR_STRR6 HTH-type transcriptional regulat ( 328) 177 47.8 0.00012
Q65TP0|PURR_MANSM HTH-type transcriptional repress ( 334) 176 47.6 0.00015
P24242|ASCG_ECOLI HTH-type transcriptional regulat ( 337) 176 47.6 0.00015
P74892|SCRR_STAXY Sucrose operon repressor - Staph ( 320) 175 47.4 0.00016
Q56201|MALR_STAXY HTH-type transcriptional regulat ( 337) 175 47.4 0.00017
Q9KRC1|PURR_VIBCH HTH-type transcriptional repress ( 336) 174 47.1 0.0002
P27871|ENDR_PAEPO Probable HTH-type transcriptiona ( 340) 174 47.1 0.00021
Q5E4H9|PURR_VIBF1 HTH-type transcriptional repress ( 337) 172 46.7 0.00028
Q1C774|PURR_YERPA HTH-type transcriptional repress ( 341) 171 46.4 0.00034
Q1CIL0|PURR_YERPN HTH-type transcriptional repress ( 341) 171 46.4 0.00034
Q7CIS2|PURR_YERPE HTH-type transcriptional repress ( 341) 171 46.4 0.00034
Q66A32|PURR_YERPS HTH-type transcriptional repress ( 341) 171 46.4 0.00034
P44329|RBSR_HAEIN Ribose operon repressor - Haemop ( 332) 170 46.2 0.00039
P72396|MALR_STRCO HTH-type transcriptional regulat ( 344) 159 43.6 0.0024
P72469|REG1_STRLI HTH-type transcriptional regulat ( 345) 156 42.9 0.0039
Q9CPA2|RBSR_PASMU Ribose operon repressor - Pasteu ( 337) 154 42.4 0.0053
Q6D5W3|PURR_ERWCT HTH-type transcriptional repress ( 341) 153 42.2 0.0063
Q7N3V8|PURR_PHOLL HTH-type transcriptional repress ( 341) 151 41.7 0.0088
O31690|YKVZ_BACSU Uncharacterized HTH-type transcr ( 321) 147 40.8 0.016
P0ACN7|CYTR_ECOLI HTH-type transcriptional repress ( 341) 147 40.8 0.017
P0ACN8|CYTR_ECOL6 HTH-type transcriptional repress ( 341) 147 40.8 0.017
P0ACN9|CYTR_ECO57 HTH-type transcriptional repress ( 341) 147 40.8 0.017
P0ACP0|CYTR_SHIFL HTH-type transcriptional repress ( 341) 147 40.8 0.017
P23823|YAML_STRLM Uncharacterized HTH-type transcr ( 351) 146 40.6 0.02
P21867|RAFR_ECOLX HTH-type transcriptional regulat ( 336) 145 40.3 0.023
Q3Z213|PURR_SHISS HTH-type transcriptional repress ( 341) 143 39.9 0.032
Q5PH15|PURR_SALPA HTH-type transcriptional repress ( 341) 143 39.9 0.032
Q8Z6P1|PURR_SALTI HTH-type transcriptional repress ( 341) 142 39.6 0.038
O68446|PURR_SALTY HTH-type transcriptional repress ( 341) 142 39.6 0.038
Q57PK6|PURR_SALCH HTH-type transcriptional repress ( 341) 142 39.6 0.038
P31766|GALR_HAEIN HTH-type transcriptional regulat ( 332) 141 39.4 0.044
A1ABJ9|PURR_ECOK1 HTH-type transcriptional repress ( 341) 141 39.4 0.045
Q0T4B4|PURR_SHIF8 HTH-type transcriptional repress ( 341) 141 39.4 0.045
Q32FB3|PURR_SHIDS HTH-type transcriptional repress ( 341) 141 39.4 0.045
Q321B7|PURR_SHIBS HTH-type transcriptional repress ( 341) 141 39.4 0.045
P0ACP9|PURR_SHIFL HTH-type transcriptional repress ( 341) 141 39.4 0.045
Q1RBD7|PURR_ECOUT HTH-type transcriptional repress ( 341) 141 39.4 0.045
P0ACP7|PURR_ECOLI HTH-type transcriptional repress ( 341) 141 39.4 0.045
Q8FH72|PURR_ECOL6 HTH-type transcriptional repress ( 341) 141 39.4 0.045
Q0THG9|PURR_ECOL5 HTH-type transcriptional repress ( 341) 141 39.4 0.045
P0ACP8|PURR_ECO57 HTH-type transcriptional repress ( 341) 141 39.4 0.045
Q9Z3R4|AGLR_RHIME HTH-type transcriptional regulat ( 356) 141 39.4 0.047
P36949|RBSB_BACSU D-ribose-binding protein precurs ( 305) 140 39.2 0.047
P58258|REGA_CLOAB HTH-type transcriptional regulat ( 334) 137 38.4 0.084
O07567|NTDR_BACSU NTD biosynthesis operon regulato ( 329) 134 37.7 0.14
O05103|MALR_CLOBU HTH-type transcriptional regulat ( 335) 134 37.7 0.14
P24508|SCRR_VIBAL Sucrose operon repressor - Vibri ( 94) 105 31.0 4.2
P0A2C6|RBSB_SALTI D-ribose-binding periplasmic pro ( 296) 111 32.3 5.2
P0A2C5|RBSB_SALTY D-ribose-binding periplasmic pro ( 296) 111 32.3 5.2
P02925|RBSB_ECOLI D-ribose-binding periplasmic pro ( 296) 111 32.3 5.2
Q53217|Y4VI_RHISN Uncharacterized short-chain type ( 548) 113 32.8 7
Q63ZT8|FTHFD_XENTR 10-formyltetrahydrofolate dehyd ( 902) 116 33.5 7.1
Q037J6|KPTA_LACC3 Probable RNA 2'-phosphotransfera ( 188) 106 31.2 7.3
P56674|HH_DROHY Protein hedgehog precursor [Contai ( 422) 111 32.3 7.4
Q9KNV2|AROB_VIBCH 3-dehydroquinate synthase - Vibr ( 361) 110 32.1 7.4
P96711|ARAR_BACSU Arabinose metabolism transcripti ( 362) 109 31.9 8.8
>>P07760|RBTR_KLEAE Ribitol operon repressor - Klebsiell (270 aa)
s-w opt: 1789 Z-score: 2265.1 bits: 426.8 E(): 8.2e-119
Smith-Waterman score: 1789; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
P07760 MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
10 20 30 40 50 60
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
P07760 SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
70 80 90 100 110 120
130 140 150 160 170 180
Unknow VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLSPSVISDNYGGAKALTHKILANSAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
P07760 VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLSPSVISDNYGGAKALTHKILANSAR
130 140 150 160 170 180
190 200 210 220 230 240
Unknow RRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACRSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
P07760 RRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACRSG
190 200 210 220 230 240
250 260 270
Unknow LAARRRCCRGYLLTRRYPWKGLCAGCRRWV
::::::::::::::::::::::::::::::
P07760 LAARRRCCRGYLLTRRYPWKGLCAGCRRWV
250 260 270
>>P37076|SCRR_KLEPN Sucrose operon repressor - Klebsiell (334 aa)
s-w opt: 331 Z-score: 410.8 bits: 84.1 E(): 1.6e-15
Smith-Waterman score: 331; 31.5% identity (63.1% similar) in 222 aa overlap (2-219:4-216)
10 20 30 40 50
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASM
:..:: :.:::.::: ...: .::: :. :.. . :.: ::.:: : . .:
P37076 MKTKRVTIKDIAELAGVSKATASLVLNGRGKELRVAQETRERVLAIAREQHYQPSIHARS
10 20 30 40 50 60
60 70 80 90 100 110
Unknow LRSKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLS
::...::.::...:. : :. .....: . :: :. .:.:: . : : .:. :..
P37076 LRDNRSHTIGLVVPEITNYGFAVFSHELETLCREAGVQLLISCTDENPGQESVVVNNMIA
70 80 90 100 110 120
120 130 140 150 160 170
Unknow WQVDWVVATGATNPDK-ISALCQQAGVPTVNLDLPGSLS--PSVISDNYGGAKALTHKIL
::: ..... . : . : .: .:.: .: : : : :..:. . : .:
P37076 RQVDGLIVASCMHSDADYQKLSEQ--LPVVLFDRSPSDSALPLVMTDSVTPTAELISRIA
130 140 150 160 170
180 190 200 210 220 230
Unknow ANSARRRGELAPLTFIGGRRATITPA-SVYAASTMRIASWGLACRRRIFWLPAIRKATLR
. : . . :.::. ..:. . :. :. .:. :.. :
P37076 PQHADE------FWFLGGQ-PRLSPSRDRLAGFTQGLAQAGITLRPEWVINGNYHPSSGY
180 190 200 210 220 230
240 250 260 270
Unknow TACRSGLAARRRCCRGYLLTRRYPWKGLCAGCRRWV
P37076 EMFAALCARLGRPPKALFTAACGLLEGVLRYMSQHHLLDSNIHLASFDDHYLYDSLSLRI
240 250 260 270 280 290
>>P37077|SCRR_SALTY Sucrose operon repressor - Salmonell (334 aa)
s-w opt: 326 Z-score: 404.5 bits: 82.9 E(): 3.5e-15
Smith-Waterman score: 326; 32.4% identity (63.1% similar) in 222 aa overlap (2-219:4-216)
10 20 30 40 50
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASM
:..:: :.:: .::: ...: .::: :. :.. . :.: ::... : . .:
P37077 MKTKRVTIKDIAEQAGVSKATASLVLNGRGKELRVAQETRERVLSIARKHHYQPSIHARS
10 20 30 40 50 60
60 70 80 90 100 110
Unknow LRSKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLS
::...::.::...:. :. :. .:...: . :: :. .:.:: . : : .:. :..
P37077 LRNNRSHTIGLVVPEITNHGFAVFAHELEMLCREAGVQLLISCTDENPGQESVVVNNMIA
70 80 90 100 110 120
120 130 140 150 160 170
Unknow WQVD-WVVATGATNPDKISALCQQAGVPTVNLD-LPG-SLSPSVISDNYGGAKALTHKIL
::: .::. : : :: .:.: .: :. : : :..:. . : .:
P37077 RQVDGMIVASCMHNDADYLKLSQQ--LPVVLFDRCPNESALPLVMTDSITPTAELISRI-
130 140 150 160 170
180 190 200 210 220 230
Unknow ANSARRRGELAPLTFIGGRRATITPA-SVYAASTMRIASWGLACRRRIFWLPAIRKATLR
. .. : . :.::. : ..:. . .. :. .:. :.: :
P37077 --APQHSDE---FWFLGGQ-ARLSPSRDRLTGFTQGLAQAGIALRPEWVINGNYHPSSGY
180 190 200 210 220 230
240 250 260 270
Unknow TACRSGLAARRRCCRGYLLTRRYPWKGLCAGCRRWV
P37077 EMFAALCARLGRPPKALFTAACGLLEGVLRYMSQHHLLDSDIHLTSFDDHYLYDSLSLRI
240 250 260 270 280 290
>>P0A2P8|FRUR_SALTY Fructose repressor - Salmonella typh (334 aa)
s-w opt: 284 Z-score: 351.1 bits: 73.0 E(): 3.3e-12
Smith-Waterman score: 284; 33.3% identity (73.0% similar) in 126 aa overlap (8-133:5-130)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
..:.:.::: ...: ..::. :. :.: : .::: ...:..: : :. ::
P0A2P8 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLR
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
. ... ::..:: .: . ::. .:..::.:: .:.:.. .:. :.. .. .:. :
P0A2P8 AGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQ
60 70 80 90 100 110
130 140 150 160 170 180
Unknow VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLSPSVISDNYGGAKALTHKILANSAR
:: .... . :.
P0A2P8 VDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKF
120 130 140 150 160 170
>>P0A2P9|FRUR_SALTI Fructose repressor - Salmonella typh (334 aa)
s-w opt: 284 Z-score: 351.1 bits: 73.0 E(): 3.3e-12
Smith-Waterman score: 284; 33.3% identity (73.0% similar) in 126 aa overlap (8-133:5-130)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
..:.:.::: ...: ..::. :. :.: : .::: ...:..: : :. ::
P0A2P9 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLR
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
. ... ::..:: .: . ::. .:..::.:: .:.:.. .:. :.. .. .:. :
P0A2P9 AGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQ
60 70 80 90 100 110
130 140 150 160 170 180
Unknow VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLSPSVISDNYGGAKALTHKILANSAR
:: .... . :.
P0A2P9 VDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKF
120 130 140 150 160 170
>>P0ACP4|FRUR_SHIFL Fructose repressor - Shigella flexne (334 aa)
s-w opt: 284 Z-score: 351.1 bits: 73.0 E(): 3.3e-12
Smith-Waterman score: 284; 33.3% identity (73.0% similar) in 126 aa overlap (8-133:5-130)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
..:.:.::: ...: ..::. :. :.: : .::: ...:..: : :. ::
P0ACP4 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLR
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
. ... ::..:: .: . ::. .:..::.:: .:.:.. .:. :.. .. .:. :
P0ACP4 AGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQ
60 70 80 90 100 110
130 140 150 160 170 180
Unknow VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLSPSVISDNYGGAKALTHKILANSAR
:: .... . :.
P0ACP4 VDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKF
120 130 140 150 160 170
>>P0ACP2|FRUR_ECOL6 Fructose repressor - Escherichia col (334 aa)
s-w opt: 284 Z-score: 351.1 bits: 73.0 E(): 3.3e-12
Smith-Waterman score: 284; 33.3% identity (73.0% similar) in 126 aa overlap (8-133:5-130)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
..:.:.::: ...: ..::. :. :.: : .::: ...:..: : :. ::
P0ACP2 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLR
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
. ... ::..:: .: . ::. .:..::.:: .:.:.. .:. :.. .. .:. :
P0ACP2 AGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQ
60 70 80 90 100 110
130 140 150 160 170 180
Unknow VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLSPSVISDNYGGAKALTHKILANSAR
:: .... . :.
P0ACP2 VDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKF
120 130 140 150 160 170
>>P0ACP1|FRUR_ECOLI Fructose repressor - Escherichia col (334 aa)
s-w opt: 284 Z-score: 351.1 bits: 73.0 E(): 3.3e-12
Smith-Waterman score: 284; 33.3% identity (73.0% similar) in 126 aa overlap (8-133:5-130)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
..:.:.::: ...: ..::. :. :.: : .::: ...:..: : :. ::
P0ACP1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLR
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
. ... ::..:: .: . ::. .:..::.:: .:.:.. .:. :.. .. .:. :
P0ACP1 AGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQ
60 70 80 90 100 110
130 140 150 160 170 180
Unknow VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLSPSVISDNYGGAKALTHKILANSAR
:: .... . :.
P0ACP1 VDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKF
120 130 140 150 160 170
>>P0ACP3|FRUR_ECO57 Fructose repressor - Escherichia col (334 aa)
s-w opt: 284 Z-score: 351.1 bits: 73.0 E(): 3.3e-12
Smith-Waterman score: 284; 33.3% identity (73.0% similar) in 126 aa overlap (8-133:5-130)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
..:.:.::: ...: ..::. :. :.: : .::: ...:..: : :. ::
P0ACP3 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLR
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
. ... ::..:: .: . ::. .:..::.:: .:.:.. .:. :.. .. .:. :
P0ACP3 AGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQ
60 70 80 90 100 110
130 140 150 160 170 180
Unknow VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLSPSVISDNYGGAKALTHKILANSAR
:: .... . :.
P0ACP3 VDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKF
120 130 140 150 160 170
>>P37947|DEGA_BACSU HTH-type transcriptional regulator d (337 aa)
s-w opt: 283 Z-score: 349.7 bits: 72.8 E(): 4e-12
Smith-Waterman score: 283; 33.0% identity (63.1% similar) in 176 aa overlap (3-172:2-174)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
: ::::.:. .::: ..:: ..:.. ::: : .:: . .:..:. : .:. :
P37947 MKTTIYDVAKAAGVSITTVSRVINNTG---RISDKTRQKVMNVMNEMAYTPNVHAAALT
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.:....:... : .: ..: .:. .:: : : :. .: : :. : . ... . .
P37947 GKRTNMIALVAPDISNPFYGELAKSIEERADELGFQMLICSTDYDPKKETKYFSVLKQKK
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVV-ATGATNPDKISALCQQAG--VPTVNLDLPGSLSPS---VISDNYGGAKALTHKI
:: .. ::: . :..::: . :. .: . .. : : ::.: :: .: :
P37947 VDGIIFATGIESHDSMSALEEIASEQIPIAMISQDKPLLPMDIVVIDDVRGGYEAAKHLL
120 130 140 150 160 170
180 190 200 210 220 230
Unknow LANSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLR
P37947 SLGHTNIACIIGDGSTTGEKNRIKGFRQAMEEAGVPIDESLIIQTRFSLESGKEEAGKLL
180 190 200 210 220 230
>>P18811|MALI_ECOLI Maltose regulon regulatory protein m (342 aa)
s-w opt: 283 Z-score: 349.6 bits: 72.8 E(): 4e-12
Smith-Waterman score: 283; 28.9% identity (60.5% similar) in 228 aa overlap (2-218:5-223)
10 20 30 40 50
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQAS
:::::.:.: .:::.:.:: .:.: : :::. .:.:. :: :.. :::::
P18811 MATAKKITIHDVALAAGVSVSTVSLVLSG---KGRISTATGERVNAAIEELGFVRNRQAS
10 20 30 40 50
60 70 80 90 100 110
Unknow MLRSKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAML
::. .: :::.:. . ... .. . : . .: . .. . : . . .:
P18811 ALRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLHGGKDGEQLAQRFSLLL
60 70 80 90 100 110
120 130 140 150 160 170
Unknow SWQVDWVVATGAT-NPDKISALCQQAGVPTVNLDLPGSLSP--SVISDNYGGAKALTHKI
. :: :: .::. . : . . .. ..:.. . . :. .: ::. .:. ::...
P18811 NQGVDGVVIAGAAGSSDDLRRMAEEKAIPVIFASRASYLDDVDTVRPDNMQAAQLLTEHL
120 130 140 150 160 170
180 190 200 210 220
Unknow LANSARRRGELAPLTFIGGRRATITPASV---YAASTMRI-----ASWGLACRRRIFWLP
. :. .: ....::. ...: : : :. ... ..: : :
P18811 IRNGHQR------IAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSDWVLECTSSQKQAA
180 190 200 210 220 230
230 240 250 260 270
Unknow AIRKATLRTACRSGLAARRRCCRGYLLTRRYPWKGLCAGCRRWV
P18811 EAITALLRHNPTISAVVCYNETIAMGAWFGLLKAGRQSGESGVDRYFEQQVSLAAFTDAT
240 250 260 270 280 290
>>Q6GFX2|CCPA_STAAR Probable catabolite control protein (329 aa)
s-w opt: 280 Z-score: 346.1 bits: 72.1 E(): 6.3e-12
Smith-Waterman score: 280; 30.4% identity (62.3% similar) in 207 aa overlap (4-208:3-200)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
.::::.:. . :: ..:: ..::: . ..:. .::... .. .: : : :
Q6GFX2 MTVTIYDVAREARVSMATVSRVVNGN---QNVKAETKNKVNEVIKRLNYRPNAVARGLA
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
:::. ..:.::: .: :....:. .:..: ::. . :: : : . .:: :
Q6GFX2 SKKTTTVGVIIPDISNIYYSQLARGLEDIAIMYKYHSIISNSDNDPEKEKEIFNNLLSKQ
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLS--PSVISDNYGGAKALTHKILANS
:: .. :.: .... : .:..::.: :. . :: : .:: .: :.. ..
Q6GFX2 VDGIIFLGGTITEEMKELINQSSVPVVVSGTNGKDAHIASVNIDFTEAAKEITGKLIEKG
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACR
:. ....::... . .: :. :
Q6GFX2 AKS------FALVGGEHSKKAQEDVLAGLTEVLNKNSLQLGDTLNCSGAESYKEGVKAFA
180 190 200 210 220 230
>>Q8NW33|CCPA_STAAW Probable catabolite control protein (329 aa)
s-w opt: 277 Z-score: 342.3 bits: 71.4 E(): 1e-11
Smith-Waterman score: 277; 29.3% identity (61.4% similar) in 215 aa overlap (4-216:3-208)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
.::::.:. . :: ..:: ..::: . ..:. .::... .. .: : : :
Q8NW33 MTVTIYDVAREARVSMATVSRVVNGN---QNVKAETKNKVNEVIKRLNYRPNAVARGLA
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
:::. ..:.::: .: :....:. .:..: ::. . :: : : . .:: :
Q8NW33 SKKTTTVGVIIPDISNIYYSQLARGLEDIATMYKYHSIISNSDNDPEKEKEIFNNLLSKQ
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLS--PSVISDNYGGAKALTHKILANS
:: .. :.: .... : .:..::.: :. . :: : .:: .: ... ..
Q8NW33 VDGIIFLGGTITEEMKELINQSSVPVVVSGTNGKDAHIASVNIDFTEAAKEITGELIEKG
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACR
:. ....::... . .: . : . . ::
Q8NW33 AKS------FALVGGEHSKKAQEDVLEGLTEVLNKNGLQLGDTLNCSGAESYKEGVKAFA
180 190 200 210 220 230
240 250 260 270
Unknow SGLAARRRCCRGYLLTRRYPWKGLCAGCRRWV
Q8NW33 KMKGNLPDAILCISDEEAIGIMHSAMDAGIKVPEELQIISFNNTRLVEMVRPQLSSVIQP
240 250 260 270 280 290
>>Q6G8J1|CCPA_STAAS Probable catabolite control protein (329 aa)
s-w opt: 277 Z-score: 342.3 bits: 71.4 E(): 1e-11
Smith-Waterman score: 277; 29.3% identity (61.4% similar) in 215 aa overlap (4-216:3-208)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
.::::.:. . :: ..:: ..::: . ..:. .::... .. .: : : :
Q6G8J1 MTVTIYDVAREARVSMATVSRVVNGN---QNVKAETKNKVNEVIKRLNYRPNAVARGLA
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
:::. ..:.::: .: :....:. .:..: ::. . :: : : . .:: :
Q6G8J1 SKKTTTVGVIIPDISNIYYSQLARGLEDIATMYKYHSIISNSDNDPEKEKEIFNNLLSKQ
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLS--PSVISDNYGGAKALTHKILANS
:: .. :.: .... : .:..::.: :. . :: : .:: .: ... ..
Q6G8J1 VDGIIFLGGTITEEMKELINQSSVPVVVSGTNGKDAHIASVNIDFTEAAKEITGELIEKG
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACR
:. ....::... . .: . : . . ::
Q6G8J1 AKS------FALVGGEHSKKAQEDVLEGLTEVLNKNGLQLGDTLNCSGAESYKEGVKAFA
180 190 200 210 220 230
240 250 260 270
Unknow SGLAARRRCCRGYLLTRRYPWKGLCAGCRRWV
Q6G8J1 KMKGNLPDAILCISDEEAIGIMHSAMDAGIKVPEELQIISFNNTRLVEMVRPQLSSVIQP
240 250 260 270 280 290
>>P99175|CCPA_STAAN Probable catabolite control protein (329 aa)
s-w opt: 277 Z-score: 342.3 bits: 71.4 E(): 1e-11
Smith-Waterman score: 277; 29.3% identity (61.4% similar) in 215 aa overlap (4-216:3-208)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
.::::.:. . :: ..:: ..::: . ..:. .::... .. .: : : :
P99175 MTVTIYDVAREARVSMATVSRVVNGN---QNVKAETKNKVNEVIKRLNYRPNAVARGLA
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
:::. ..:.::: .: :....:. .:..: ::. . :: : : . .:: :
P99175 SKKTTTVGVIIPDISNIYYSQLARGLEDIATMYKYHSIISNSDNDPEKEKEIFNNLLSKQ
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLS--PSVISDNYGGAKALTHKILANS
:: .. :.: .... : .:..::.: :. . :: : .:: .: ... ..
P99175 VDGIIFLGGTITEEMKELINQSSVPVVVSGTNGKDAHIASVNIDFTEAAKEITGELIEKG
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACR
:. ....::... . .: . : . . ::
P99175 AKS------FALVGGEHSKKAQEDVLEGLTEVLNKNGLQLGDTLNCSGAESYKEGVKAFA
180 190 200 210 220 230
240 250 260 270
Unknow SGLAARRRCCRGYLLTRRYPWKGLCAGCRRWV
P99175 KMKGNLPDAILCISDEEAIGIMHSAMDAGIKVPEELQIISFNNTRLVEMVRPQLSSVIQP
240 250 260 270 280 290
>>P67655|CCPA_STAAM Probable catabolite control protein (329 aa)
s-w opt: 277 Z-score: 342.3 bits: 71.4 E(): 1e-11
Smith-Waterman score: 277; 29.3% identity (61.4% similar) in 215 aa overlap (4-216:3-208)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
.::::.:. . :: ..:: ..::: . ..:. .::... .. .: : : :
P67655 MTVTIYDVAREARVSMATVSRVVNGN---QNVKAETKNKVNEVIKRLNYRPNAVARGLA
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
:::. ..:.::: .: :....:. .:..: ::. . :: : : . .:: :
P67655 SKKTTTVGVIIPDISNIYYSQLARGLEDIATMYKYHSIISNSDNDPEKEKEIFNNLLSKQ
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLS--PSVISDNYGGAKALTHKILANS
:: .. :.: .... : .:..::.: :. . :: : .:: .: ... ..
P67655 VDGIIFLGGTITEEMKELINQSSVPVVVSGTNGKDAHIASVNIDFTEAAKEITGELIEKG
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACR
:. ....::... . .: . : . . ::
P67655 AKS------FALVGGEHSKKAQEDVLEGLTEVLNKNGLQLGDTLNCSGAESYKEGVKAFA
180 190 200 210 220 230
240 250 260 270
Unknow SGLAARRRCCRGYLLTRRYPWKGLCAGCRRWV
P67655 KMKGNLPDAILCISDEEAIGIMHSAMDAGIKVPEELQIISFNNTRLVEMVRPQLSSVIQP
240 250 260 270 280 290
>>Q5HF38|CCPA_STAAC Probable catabolite control protein (329 aa)
s-w opt: 277 Z-score: 342.3 bits: 71.4 E(): 1e-11
Smith-Waterman score: 277; 29.3% identity (61.4% similar) in 215 aa overlap (4-216:3-208)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
.::::.:. . :: ..:: ..::: . ..:. .::... .. .: : : :
Q5HF38 MTVTIYDVAREARVSMATVSRVVNGN---QNVKAETKNKVNEVIKRLNYRPNAVARGLA
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
:::. ..:.::: .: :....:. .:..: ::. . :: : : . .:: :
Q5HF38 SKKTTTVGVIIPDISNIYYSQLARGLEDIATMYKYHSIISNSDNDPEKEKEIFNNLLSKQ
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLS--PSVISDNYGGAKALTHKILANS
:: .. :.: .... : .:..::.: :. . :: : .:: .: ... ..
Q5HF38 VDGIIFLGGTITEEMKELINQSSVPVVVSGTNGKDAHIASVNIDFTEAAKEITGELIEKG
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACR
:. ....::... . .: . : . . ::
Q5HF38 AKS------FALVGGEHSKKAQEDVLEGLTEVLNKNGLQLGDTLNCSGAESYKEGVKAFA
180 190 200 210 220 230
240 250 260 270
Unknow SGLAARRRCCRGYLLTRRYPWKGLCAGCRRWV
Q5HF38 KMKGNLPDAILCISDEEAIGIMHSAMDAGIKVPEELQIISFNNTRLVEMVRPQLSSVIQP
240 250 260 270 280 290
>>Q56194|CCPA_STAXY Probable catabolite control protein (329 aa)
s-w opt: 265 Z-score: 327.1 bits: 68.5 E(): 7.2e-11
Smith-Waterman score: 265; 29.7% identity (62.0% similar) in 192 aa overlap (4-193:3-185)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
.::::.:. . :: ..:: ..::: . .. . .::... .. .: : : :
Q56194 MTVTIYDVAREARVSMATVSRVVNGN---QNVKPETRDKVNEVIKKLNYRPNAVARGLA
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
::.. ..:.::: .: :....:. .:..: ::. . : : : . .:: :
Q56194 SKRTTTVGVIIPDISNVYYSQLARGLEDIATMYKYHSIISNSDNDPSKEKEIFNNLLSKQ
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLS--PSVISDNYGGAKALTHKILANS
:: .. :.: ..:. : ....::.: :. :: : ..:: .:.... ..
Q56194 VDGIIFLGGTISEEIKDLINKSSVPVVVSGTNGKDEGISSVNIDFESAAKEITEHLIEKG
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACR
:. ..:.::
Q56194 AKS------FAFVGGDYSKKAQEDVLVGLKDVLVQHELELDEQLIFNGNETYKDGLRAFE
180 190 200 210 220 230
>>Q5HNH3|CCPA_STAEQ Probable catabolite control protein (329 aa)
s-w opt: 263 Z-score: 324.5 bits: 68.1 E(): 1e-10
Smith-Waterman score: 263; 30.2% identity (62.0% similar) in 192 aa overlap (4-193:3-185)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
.::::.:. . :: ..:: ..::: . .. . .::... .. .: : : :
Q5HNH3 MTVTIYDVAREARVSMATVSRVVNGN---QNVKPETRNKVNEVIKRLNYRPNAVARGLA
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
::.. ..:.::: .: :....:. .:..: ::. . :: : : . .:: :
Q5HNH3 SKRTTTVGVIIPDISNVYYSQLARGLEDIATMYKYHSIISNSDNDPEKEKEIFNNLLSKQ
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLS--PSVISDNYGGAKALTHKILANS
:: .. :.: ..:..: .:..::.: :. . :: : .:. :. .. ..
Q5HNH3 VDGIIFLGGTISEEIKSLINQSSVPVVVSGTDGKDDHIASVNIDFKQAAEEATQYLIEKG
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACR
:. ...:::
Q5HNH3 AKT------FSLIGGEYSIKAQDDVLEGLKNVLSQHQLKLDDTLHLTGNESYKSGIKTFE
180 190 200 210 220 230
>>Q8CNV8|CCPA_STAES Probable catabolite control protein (329 aa)
s-w opt: 263 Z-score: 324.5 bits: 68.1 E(): 1e-10
Smith-Waterman score: 263; 30.2% identity (62.0% similar) in 192 aa overlap (4-193:3-185)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
.::::.:. . :: ..:: ..::: . .. . .::... .. .: : : :
Q8CNV8 MTVTIYDVAREARVSMATVSRVVNGN---QNVKPETRNKVNEVIKRLNYRPNAVARGLA
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
::.. ..:.::: .: :....:. .:..: ::. . :: : : . .:: :
Q8CNV8 SKRTTTVGVIIPDISNVYYSQLARGLEDIATMYKYHSIISNSDNDPEKEKEIFNNLLSKQ
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLS--PSVISDNYGGAKALTHKILANS
:: .. :.: ..:..: .:..::.: :. . :: : .:. :. .. ..
Q8CNV8 VDGIIFLGGTISEEIKSLINQSSVPVVVSGTDGKDDHIASVNIDFKQAAEEATQYLIEKG
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACR
:. ...:::
Q8CNV8 AKT------FSLIGGEYSIKAQDDVLEGLKNVLSQHQLKLDDTLHLTGNESYKSGIKTFE
180 190 200 210 220 230
>>P0ACP6|GNTR_ECOL6 HTH-type transcriptional regulator g (331 aa)
s-w opt: 262 Z-score: 323.2 bits: 67.8 E(): 1.2e-10
Smith-Waterman score: 262; 27.4% identity (60.4% similar) in 197 aa overlap (2-194:4-189)
10 20 30 40 50
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASM
:. .. :.:. ::. .:: .: . ...:. : :.. .: :: :: ..
P0ACP6 MKKKRPVLQDVADRVGVTKMTVSRFLR---NPEQVSVALRGKIAAALDELGYIPNRAPDI
10 20 30 40 50
60 70 80 90 100 110
Unknow LRSKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLS
: . :..::...:. :. :. . . .: .. .: ... .::.: : ...:::
P0ACP6 LSNATSRAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLS
60 70 80 90 100 110
120 130 140 150 160 170
Unknow WQVDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLSP----SVISDNYGGAKALTHKI
:..: .. : :. . . . ::.:.: .: : :: .: ::. .:. .: :
P0ACP6 WNIDGLILTERTHTPRTLKMIEVAGIPVV--ELMDSKSPCLDIAVGFDNFEAARQMTTAI
120 130 140 150 160 170
180 190 200 210 220 230
Unknow LANSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLR
.: . :. ....:.:
P0ACP6 IARGHRH------IAYLGARLDERTIIKQKGYEQAMLDAGLVPYSVMVEQSSSYSSGIEL
180 190 200 210 220
>>P0ACP5|GNTR_ECOLI HTH-type transcriptional regulator g (331 aa)
s-w opt: 262 Z-score: 323.2 bits: 67.8 E(): 1.2e-10
Smith-Waterman score: 262; 27.4% identity (60.4% similar) in 197 aa overlap (2-194:4-189)
10 20 30 40 50
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASM
:. .. :.:. ::. .:: .: . ...:. : :.. .: :: :: ..
P0ACP5 MKKKRPVLQDVADRVGVTKMTVSRFLR---NPEQVSVALRGKIAAALDELGYIPNRAPDI
10 20 30 40 50
60 70 80 90 100 110
Unknow LRSKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLS
: . :..::...:. :. :. . . .: .. .: ... .::.: : ...:::
P0ACP5 LSNATSRAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLS
60 70 80 90 100 110
120 130 140 150 160 170
Unknow WQVDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLSP----SVISDNYGGAKALTHKI
:..: .. : :. . . . ::.:.: .: : :: .: ::. .:. .: :
P0ACP5 WNIDGLILTERTHTPRTLKMIEVAGIPVV--ELMDSKSPCLDIAVGFDNFEAARQMTTAI
120 130 140 150 160 170
180 190 200 210 220 230
Unknow LANSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLR
.: . :. ....:.:
P0ACP5 IARGHRH------IAYLGARLDERTIIKQKGYEQAMLDAGLVPYSVMVEQSSSYSSGIEL
180 190 200 210 220
>>O07329|CCPA_STRMU Probable catabolite control protein (333 aa)
s-w opt: 243 Z-score: 299.0 bits: 63.4 E(): 2.6e-09
Smith-Waterman score: 243; 29.8% identity (63.7% similar) in 168 aa overlap (4-168:7-170)
10 20 30 40 50
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQAS
:::::.:. .::: ..:: ..::: . .. . .:: .. .. : : :
O07329 MNTDDTITIYDVAREAGVSMATVSRVVNGN---KNVKENTRKKVLEVIDRLDYRPNAVAR
10 20 30 40 50
60 70 80 90 100 110
Unknow MLRSKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAML
: :::. ..:..::. : ::. .:. ....: ... . . . :........
O07329 GLASKKTTTVGVVIPNIANAYFSILAKGIDDIATMYKYNIVLASSDEDDDKEVNVINTLF
60 70 80 90 100 110
120 130 140 150 160 170
Unknow SWQVDWVVATGATNPDKISALCQQAGVPTV---NLDLPGSLSPSVISDNYGGAKALTHKI
. ::: .. : .:: : ..: .:.: ..:: .: ::: :. .:.
O07329 AKQVDGIIFMGHHLTEKIRAEFSRARTPVVLSGTVDLEHQL-PSVNIDHSKAAQDAVALL
120 130 140 150 160 170
180 190 200 210 220 230
Unknow LANSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLR
O07329 AKHHDKIAFVSGPLIDDINGKVRLAGYKEGLKKKGLPFKEGLVFEAQYKYQEGYQLAQRV
180 190 200 210 220 230
>>Q05954|Y4158_STRCO Uncharacterized HTH-type transcript (340 aa)
s-w opt: 243 Z-score: 298.8 bits: 63.4 E(): 2.7e-09
Smith-Waterman score: 243; 25.4% identity (58.8% similar) in 240 aa overlap (1-234:1-232)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
: :.: :.:.:.:.:...:: ..:.. : .. :.: .: :: .: :. .
Q05954 MAKVTRDDVARLAGTSTAVVSYVINNG--PRPVAPATRERVLAAIKELGYRPDRVAQAMA
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
:... .::.:.: . .:. .:. : : ::: . .. . : :.. ..:.:. .
Q05954 SRRTDLIGLIVPDARQPFFAEMAHAVEWAASERGKMVLVGNSDYVGEREVHYLRAFLGMR
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQAGVPTVNL-DLPGSLSP-SVISDNYGGAKALTHKILANS
:. .. .. . :. .: . . .: : . : ... .:..:. :::. ....: ..
Q05954 VSGLILVSHALNDNAAAEIDAWDARVVLLHERPEAIDDVAVVTDDLGGAQLAVRHLLEHG
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ARRRGELAPLTFIGGRRATIT---PASVYAASTMR-IASWGLACRRRIFWLPAIRKATLR
: .. .:: : . :.: .. . : . ::. . :.: : : . :
Q05954 ------YAYVACMGGTAETPSVGDPVSDHVEGWRRAMKEAGLSTEGRLFEAPYNRYDAYR
180 190 200 210 220 230
240 250 260 270
Unknow TACRSGLAARRRCCRGYLLTRRYPWKGLCAGCRRWV
Q05954 VGLELLSGPQRPPAIFCSTDDQAIGLLRAARELRIDVPGELAVAGFDDIKEADLADPPLT
240 250 260 270 280 290
>>P43472|SCRR_PEDPE Sucrose operon repressor - Pediococc (326 aa)
s-w opt: 241 Z-score: 296.6 bits: 62.9 E(): 3.6e-09
Smith-Waterman score: 241; 31.3% identity (57.6% similar) in 198 aa overlap (3-195:2-193)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
: . :.:.:.::::..:: ..:.. .:.. ::: .: : : .: :.
P43472 MKPKLNDVAKLAGVSATTVSRVINNHG---YLSSQTKEKVFAAMRELHYQPNNMARSLQ
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.:....::.:. .: .:: .. :.:.. .. :. . :. : . .. ... :
P43472 GKNTRLIGVIFSDISNPFFGELVSRIEKILFAKNYKVILCNSADDPQKERDYLQMLMANQ
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLS-PSVISDNYGG---AKALTHKILA
:: ..: :: : : :: :.: ...: : . : : :::: : : :. :
P43472 VDGIIA-GAHNLG-IEEY-QQYGLPIISFDRYLSDNIPIVSSDNYQGGWLATQTLHQAGA
120 130 140 150 160 170
180 190 200 210 220 230
Unknow -NSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRT
: : :. . .:::
P43472 TNVAIFTGKSHAGSPTNGRREGYEAYLTAQQLTPHVHELPFELTPALKMMEIKTIMTQHQ
180 190 200 210 220 230
>>P25144|CCPA_BACSU Catabolite control protein A - Bacil (334 aa)
s-w opt: 234 Z-score: 287.6 bits: 61.2 E(): 1.2e-08
Smith-Waterman score: 234; 31.3% identity (59.5% similar) in 195 aa overlap (1-186:1-189)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:..:::::.:. ..:: ..:: ..::: . . . : :: . :. :: : : :
P25144 MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRK---KVLEAIERLGYRPNAVARGLA
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
:::. ..:.::: .. ... .:. .:..: :.. . . : :.. ...::. :
P25144 SKKTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQ
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSL-----SPSVISDN----YGGAKALT
:: .: :.. :. : ... :: : : .:. .::: : : ..: :.
P25144 VDGIVFMGGNITDEHVAEFKRSPVPIV---LAASVEEQEETPSVAIDYEQAIYDAVKLLV
120 130 140 150 160 170
180 190 200 210 220 230
Unknow HKILANSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKA
: .. : : .:
P25144 DKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHL
180 190 200 210 220 230
>>P39343|IDNR_ECOLI HTH-type transcriptional regulator i (332 aa)
s-w opt: 229 Z-score: 281.2 bits: 60.1 E(): 2.6e-08
Smith-Waterman score: 229; 25.3% identity (62.6% similar) in 182 aa overlap (3-182:5-183)
10 20 30 40 50
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASM
.:.. :.: :.::. .:: . . .... . .:....: :: .: :: .:
P39343 MRNHRISLQDIATLAGVTKMTVSRYIRS---PKKVAKETGERIAKIMEEINYIPNRAPGM
10 20 30 40 50
60 70 80 90 100 110
Unknow LRSKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLS
: . .:...:..::...:. :..: .: .. :.. .:. . : :.: .::
P39343 LLNAQSYTLGILIPSFQNQLFADILAGIESVTSEHNYQTLIANYNYDRDSEEESVINLLS
60 70 80 90 100 110
120 130 140 150 160 170
Unknow WQVDWVVATGATNPDKISALCQQAGVPTVNL-DLPGS-LSPSVISDNYGGAKALTHKILA
...: .. . . . . ..: .:.:.: :. : :. : :: .: .. .:
P39343 YNIDGIILSEKYHTIRTVKFLRSATIPVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLE
120 130 140 150 160 170
180 190 200 210 220 230
Unknow NSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTA
. .:..
P39343 KRVRHKILYLGSKDDTRDEQRYQGYCDAMMLHNLSPLRMNPRAISSIHLGMQLMRDALSA
180 190 200 210 220 230
>>P25748|GALS_ECOLI HTH-type transcriptional regulator g (346 aa)
s-w opt: 224 Z-score: 274.6 bits: 58.9 E(): 6.1e-08
Smith-Waterman score: 224; 26.5% identity (60.5% similar) in 185 aa overlap (4-186:2-183)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
::: :.:. .:::...:: .::.. .:: : : . . : : : .:. :
P25748 MITIRDVARQAGVSVATVSRVLNNS---TLVSADTREAVMKAVSELDYRPNANAQALA
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.. : .::... .. .::.... . .:... .: . .. : : .:..... .
P25748 TQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIGNSYHEAEKERHAIEVLIRQR
60 70 80 90 100 110
130 140 150 160 170
Unknow VD-WVVATGATNPDKISALCQQA-GVPTVNLDLPGSLSPSVISDNYGGAKALTHKILANS
. .: . : . :... . .. :. .: .:: : :: .::. :. .: :.
P25748 CNALIVHSKALSDDELAQFMDNIPGMVLINRVVPGYAHRCVCLDNLSGARMATRMLLNNG
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACR
.: : :.
P25748 HQRIGYLSSSHGIEDDAMRKAGWMSALKEQDIIPPESWIGAGTPDMPGGEAAMVELLGRN
180 190 200 210 220 230
>>Q54430|SCRR_STRMU Sucrose operon repressor - Streptoco (320 aa)
s-w opt: 222 Z-score: 272.6 bits: 58.4 E(): 7.8e-08
Smith-Waterman score: 222; 26.7% identity (58.9% similar) in 202 aa overlap (8-203:7-191)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:.:.:.::: ..:: ..: .: .: : :: . :: : : :.
Q54430 MVAKLTDVAKLAGVSPTTVSRVIN---RKGYLSEKTITKVQAAMKTLGYKPNNLARSLQ
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.:....::.:.:. .. ... . : .: ..: :: .. :. : . .. . . :
Q54430 GKSAKLIGLIFPNISHIFYSELIEYLEIELFKHGYKAIICNSQNNPDKERDYLEMLEANQ
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVAT----GATNPDKISALCQQAGVPTVNLD--LPGSLSPSVISDNYGGAKALTHKI
:: .... : . .:.:: : . .: : .. : : :::. :.. .. :.
Q54430 VDGIISSSHNLGIDDYEKVSA-------PIIAFDRNLAPNI-PIVSSDNFEGGR-MAAKL
120 130 140 150 160
180 190 200 210 220 230
Unknow LANSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLR
: ...: :. .:.:. . .:...
Q54430 L----KKHGCQHPI-MIAGKDNSNSPTGLRQLGFKSVFAQAPIFHLSGELSIIRKEMEIK
170 180 190 200 210 220
>>Q9K6K2|RBSR_BACHD Ribose operon repressor - Bacillus h (331 aa)
s-w opt: 219 Z-score: 268.6 bits: 57.7 E(): 1.3e-07
Smith-Waterman score: 219; 31.4% identity (57.0% similar) in 172 aa overlap (5-175:3-168)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:. . ::...:: .:: :: .: . : : . .: .: . : :
Q9K6K2 MTTIRDVAKHAKVSVATVSRVLN---KKGYVSKEAEEAVLQAIKELNYQPSSVARSLY
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
: : .::..:: .: .: .:. :..: : .. : .. : : . ..:. .
Q9K6K2 HKTSGMIGLLIPDISNPFFPELARAVEDVASTYGYTVVLCNTDEEIEKERKYLQALKQKY
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLS-PSVISDNYGGAKALTHKILANSA
:: :. : . : : .: ..: : :: . . : : :.: .::. :...:
Q9K6K2 VDGVILTTSFLPYK---EYEQLNIPMVALDRYVNENIPLVASQNKAGARLATEHLLEQGC
120 130 140 150 160 170
180 190 200 210 220 230
Unknow RRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACRS
Q9K6K2 QFIAHIRGPKGVTPAEDRYEGFKEVVEEQEVANIVVSADFHIDEAQKVTRALLETHPTID
180 190 200 210 220 230
>>Q48544|PEPR_LACDL HTH-type transcriptional regulator p (333 aa)
s-w opt: 219 Z-score: 268.5 bits: 57.7 E(): 1.3e-07
Smith-Waterman score: 219; 26.2% identity (59.9% similar) in 202 aa overlap (2-198:4-194)
10 20 30 40 50
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASM
. .::::.:. . :: ..:: ..::: . :. . ..: .. .. : : :.
Q48544 MNKQDVTIYDVAREAKVSMATVSRVVNGNNNVRK---ETRDRVMEVIKRLHYQPNAVAQG
10 20 30 40 50
60 70 80 90 100 110
Unknow LRSKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLS
: ::.. ..:.:.: : ::. ... ....: ::. .. : : .....:.
Q48544 LASKRTTTVGLIVPDLTNLYFAELSKGIDDIAVLYKYNIIISSVENRLMKEDAVIQGLLN
60 70 80 90 100 110
120 130 140 150 160 170
Unknow WQVDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLS-----PSVISDNYGGAKALTHK
::: :. . .. . ... .:.: : :..: ::: : : : . . .
Q48544 KQVDGVIYMSNKLSEEAAEAFKRTDTPVV---LAGTVSDNLEFPSVNID-YKKADTEALN
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ILANSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATL
.: :..... : ..: ..:.:
Q48544 LLLNDGKKKLAL----IVGDKEASINRNYRIPAFEKFVADNELEGCEIFDNIKDYSDGYN
180 190 200 210 220
>>P41030|GALS_SALTY HTH-type transcriptional regulator g (340 aa)
s-w opt: 214 Z-score: 262.0 bits: 56.5 E(): 3e-07
Smith-Waterman score: 214; 26.5% identity (59.5% similar) in 185 aa overlap (4-186:2-183)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
::: :.:. .:::...:: .::.. .: . : . . :: : .:. :
P41030 MITIRDVARQAGVSVATVSRVLNNS---ALVSPDTRDAVMQAVTLLGYRPNANAQALA
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.. : .::... .. .::.... . .:... .: . .. : : .:..... .
P41030 TQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIGNSYHEAEKERHAIEVLIRQR
60 70 80 90 100 110
130 140 150 160 170
Unknow VD-WVVATGATNPDKISALCQQA-GVPTVNLDLPGSLSPSVISDNYGGAKALTHKILANS
. .: . : . ..: . .: :. .: .:: : :: .::. :. .: :.
P41030 CNALIVHSKALTDRELSDFMDQIPGMVLINRIVPGYAHRCVCLDNVSGARMATRMLLNNG
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACR
.: : ::
P41030 HQRIGYLASSHRIEDDAMRREGWLHALQEQGIAASESWIGTGTPDMQGGESAMVELLGRN
180 190 200 210 220 230
>>P46828|CCPA_BACME Glucose-resistance amylase regulator (332 aa)
s-w opt: 212 Z-score: 259.6 bits: 56.1 E(): 4.1e-07
Smith-Waterman score: 212; 29.7% identity (64.1% similar) in 145 aa overlap (4-147:3-143)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
.::::.:. ..:: ..:: ..::: .. . .:: . :. :: : : :
P46828 MNVTIYDVAREASVSMATVSRVVNGN---PNVKPSTRKKVLETIERLGYRPNAVARGLA
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
:::. ..:.::: .: ... .:. .:..: :.. . . . :.. .. ::. :
P46828 SKKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQ
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVV-ATGATNPDKISALCQQAGVPTVNLDLPGSLSPSVISDNYGGAKALTHKILANSA
:: .. .: .. ... : ... ::.:
P46828 VDGIIFMSGNVTEEHVEEL-KKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDS
120 130 140 150 160 170
>>P50844|KDGR_BACSU HTH-type transcriptional regulator k (339 aa)
s-w opt: 212 Z-score: 259.5 bits: 56.1 E(): 4.2e-07
Smith-Waterman score: 212; 28.4% identity (57.2% similar) in 201 aa overlap (5-198:10-206)
10 20 30 40 50
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQ
:: :.:: .::: :.:: .:: : :: . .... . : .: ...
P50844 MKKKTTGHTTIKDVAECAGVSKSTVSRYING--KIDAISPEKVKNIKKAIAELNYRPSKM
10 20 30 40 50
60 70 80 90 100 110
Unknow ASMLRSKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKA
:. :. :::..::... : . . . ::. . : .. : :: : : .
P50844 AQGLKIKKSKLIGFVVADITNPFSVAAFRGVEEVCDQYGYSIMVCNTDNSPEKEREMLLK
60 70 80 90 100 110
120 130 140 150 160 170
Unknow MLSWQVDWVV--ATGATNPDKISALCQQAGVPTVNLD--LPGSLSPSVISDNYGGAKALT
. . .:. .. ::: : : . :. .: .::. .: :: .: .:: .: .
P50844 LEAHSVEGLILNATGE-NKDVLRAFAEQQ-IPTILIDRKLPDLKLDTVTTDNRWITKEIL
120 130 140 150 160 170
180 190 200 210 220
Unknow HKILANSARRRGELA-PLTFIGGR--RATITPASVYAASTMRIASWGLACRRRIFWLPAI
.:. ... . .. :.. :. : ::..
P50844 QKVYSKGYTDVALFTEPISSISPRAERAAVYQEMASVQNVNGLVRLHEIDVKDKEQLKAE
180 190 200 210 220 230
>>P36673|TRER_ECOLI HTH-type transcriptional regulator t (315 aa)
s-w opt: 202 Z-score: 247.4 bits: 53.7 E(): 2e-06
Smith-Waterman score: 202; 25.2% identity (55.4% similar) in 222 aa overlap (3-220:4-220)
10 20 30 40 50
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASML
..:: :.:.::::. :.:: .::. . .: :.: . ...:.. .:.: .
P36673 MQNRLTIKDIARLSGVGKSTVSRVLNN---ESGVSQLTRERVEAVMNQHGFSPSRSARAM
10 20 30 40 50
60 70 80 90 100 110
Unknow RSKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSW
:.....:...:. . :. . .. . :.: ::. .. :.: : . ..
P36673 RGQSDKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRR
60 70 80 90 100 110
120 130 140 150 160 170
Unknow QVDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLSPSVISDNYGGAKALTHKILANSA
..: :: : :. . :... . : : :: :. :. : : ... ..
P36673 NIDGVVLFGFTGITEEMLAHWQSSLVLLARDAKGF--ASVCYDDEGAIKILMQRLYDQGH
120 130 140 150 160 170
180 190 200 210 220 230
Unknow RRRGELA-PLTFI--GGRRATITPASVYAASTMRIASW-GLACRRRIFWLPAIRKATLRT
: . :. : . . : :: : : . .:. ::: ..
P36673 RNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTA
180 190 200 210 220 230
240 250 260 270
Unknow ACRSGLAARRRCCRGYLLTRRYPWKGLCAGCRRWV
P36673 LLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVTVDPGYAEAGRQAACQL
240 250 260 270 280 290
>>O87590|CELR_THEFU HTH-type transcriptional regulator c (340 aa)
s-w opt: 202 Z-score: 246.8 bits: 53.7 E(): 2.2e-06
Smith-Waterman score: 202; 24.6% identity (56.7% similar) in 203 aa overlap (2-193:5-202)
10 20 30 40 50
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQAS
.. :. .: :.::. ..:: ..::. ..: : : : .: ::. :: :
O87590 MERRRRPTLEMVAALAGVGRGTVSRVINGS---DQVSPATREAVKRAIKELGYVPNRAAR
10 20 30 40 50
60 70 80 90 100 110
Unknow MLRSKKSHVIGMIIPKYDNR-----YFGSIAERFEEMARERGLLPIITCTRRRPELEIEA
: .... ...... . ... ....:. :::. ... : .: :
O87590 TLVTRRTDTVALVVSENNQKLFAEPFYAGIVLGVGVALSERGFQFVLATGRS--GIEHER
60 70 80 90 100 110
120 130 140 150 160
Unknow VKAMLSWQ-VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLSPSVIS----DNYGGA
. ..:. : :: :. . : . . ..:::: : : .. .: :: ::.
O87590 LGGYLAGQHVDGVLLLSLHRDDPLPQMLDEAGVPYVYGGRPLGVPEEQVSYVDIDNIGGG
120 130 140 150 160 170
170 180 190 200 210 220
Unknow KALTHKILANSARRRGELA-PLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLP
. :.... .. :: . .: : ...:
O87590 RQATQRLIETGHRRIATIAGPQDMVAGVERLQGYREALLAAGMEYDETLVSYGDFTYDSG
180 190 200 210 220 230
>>P03024|GALR_ECOLI HTH-type transcriptional regulator g (343 aa)
s-w opt: 202 Z-score: 246.7 bits: 53.7 E(): 2.2e-06
Smith-Waterman score: 202; 25.7% identity (57.9% similar) in 183 aa overlap (5-185:3-182)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:.:.:::...:: ..:.. : . : .:: : : .: : .: :
P03024 MATIKDVARLAGVSVATVSRVINNSPKASEAS-RLA--VHSAMESLSYHPNANARALA
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.. ....:... .. .::.... :..: . : . .: . . : .:.. .. .
P03024 QQTTETVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGNGYHNEQKERQAIEQLIRHR
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDK--ISALCQQAGVPTVNLDLPGSLSPSVISDNYGGAKALTHKILANS
.:. . :: : . :. :. .: ::: . . :. :: :.... ..
P03024 CAALVVHAKMIPDADLASLMKQMPGMVLINRILPGFENRCIALDDRYGAWLATRHLIQQG
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACR
: : :
P03024 HTRIGYLCSNHSISDAEDRLQGYYDALAESGIAANDRLVTFGEPDESGGEQAMTELLGRG
180 190 200 210 220 230
>>Q04939|SACR_LACLA Sucrose operon repressor - Lactococc (318 aa)
s-w opt: 201 Z-score: 246.0 bits: 53.5 E(): 2.4e-06
Smith-Waterman score: 201; 27.2% identity (57.2% similar) in 180 aa overlap (4-182:2-174)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
: . :.:. .:::...:: ..: .: .: :: . .. : : : :.
Q04939 MIKLEDVANKAGVSVTTVSRVIN---RKGYLSDATISKVEKAMQDLHYIPNAAARSLQ
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.:. ..::...: : ... . :..:. :: ... :.. . : . . .:: :
Q04939 GKSLKLIGLVFPTIKNIFYAELIEKIEQALFIRGYKAMLATTEHDEQKERDYLALLLSNQ
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLSPSVIS-DNYGGAKALTHKILANSA
:: .. :. : . . .: : : .: . .:.: ::. :. :. : : ::.
Q04939 VDGIIY-GSHNLKAHDYIAIEA--PIVAFDRLLTPETTVVSSDNFEGG-ILATKALINSG
120 130 140 150 160 170
180 190 200 210 220 230
Unknow RRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACRS
..
Q04939 SKKIAIFTGNDNTNSPTYLRRDGYLLELERNQLKTHIIKIPSQWTLLRKKVEIKKILENN
180 190 200 210 220 230
>>P0ACQ1|RBSR_ECOL6 Ribose operon repressor - Escherichi (330 aa)
s-w opt: 200 Z-score: 244.4 bits: 53.3 E(): 2.9e-06
Smith-Waterman score: 200; 27.9% identity (58.9% similar) in 190 aa overlap (5-188:3-187)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:. :.:.:.:::.:.:: ..: : : .: .. :: .: .:: . : :.
P0ACQ1 MATMKDVARLAGVSTSTVSHVIN---KDRFVSEAITAKVEAAIKELNYAPSALARSLK
10 20 30 40 50
70 80 90 100 110
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIE-AVKAMLSW
...:.:::.: : ... ... :. ::: .. :. . : ... ......
P0ACQ1 LNQTHTIGMLITASTNPFYSELVRGVERSCFERGY-SLVLCNTEGDEQRMNRNLETLMQK
60 70 80 90 100 110
120 130 140 150 160 170
Unknow QVD--WVVATGATNPDKISALCQQAGVPTVNLDL-PGSLSPSVISDN--YGGAKALTHKI
.:: .. : . .:.. . . :::: .: : . . ..:.:: :: : . :
P0ACQ1 RVDGLLLLCTETHQPSR-EIMQRYPTVPTVMMDWAPFDGDSDLIQDNSLLGGDLATQYLI
120 130 140 150 160 170
180 190 200 210 220 230
Unknow LANSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLR
. .: .::
P0ACQ1 DKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLL
180 190 200 210 220 230
>>P0ACQ2|RBSR_ECO57 Ribose operon repressor - Escherichi (330 aa)
s-w opt: 200 Z-score: 244.4 bits: 53.3 E(): 2.9e-06
Smith-Waterman score: 200; 27.9% identity (58.9% similar) in 190 aa overlap (5-188:3-187)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:. :.:.:.:::.:.:: ..: : : .: .. :: .: .:: . : :.
P0ACQ2 MATMKDVARLAGVSTSTVSHVIN---KDRFVSEAITAKVEAAIKELNYAPSALARSLK
10 20 30 40 50
70 80 90 100 110
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIE-AVKAMLSW
...:.:::.: : ... ... :. ::: .. :. . : ... ......
P0ACQ2 LNQTHTIGMLITASTNPFYSELVRGVERSCFERGY-SLVLCNTEGDEQRMNRNLETLMQK
60 70 80 90 100 110
120 130 140 150 160 170
Unknow QVD--WVVATGATNPDKISALCQQAGVPTVNLDL-PGSLSPSVISDN--YGGAKALTHKI
.:: .. : . .:.. . . :::: .: : . . ..:.:: :: : . :
P0ACQ2 RVDGLLLLCTETHQPSR-EIMQRYPTVPTVMMDWAPFDGDSDLIQDNSLLGGDLATQYLI
120 130 140 150 160 170
180 190 200 210 220 230
Unknow LANSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLR
. .: .::
P0ACQ2 DKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLL
180 190 200 210 220 230
>>P0ACQ3|RBSR_SHIFL Ribose operon repressor - Shigella f (330 aa)
s-w opt: 200 Z-score: 244.4 bits: 53.3 E(): 2.9e-06
Smith-Waterman score: 200; 27.9% identity (58.9% similar) in 190 aa overlap (5-188:3-187)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:. :.:.:.:::.:.:: ..: : : .: .. :: .: .:: . : :.
P0ACQ3 MATMKDVARLAGVSTSTVSHVIN---KDRFVSEAITAKVEAAIKELNYAPSALARSLK
10 20 30 40 50
70 80 90 100 110
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIE-AVKAMLSW
...:.:::.: : ... ... :. ::: .. :. . : ... ......
P0ACQ3 LNQTHTIGMLITASTNPFYSELVRGVERSCFERGY-SLVLCNTEGDEQRMNRNLETLMQK
60 70 80 90 100 110
120 130 140 150 160 170
Unknow QVD--WVVATGATNPDKISALCQQAGVPTVNLDL-PGSLSPSVISDN--YGGAKALTHKI
.:: .. : . .:.. . . :::: .: : . . ..:.:: :: : . :
P0ACQ3 RVDGLLLLCTETHQPSR-EIMQRYPTVPTVMMDWAPFDGDSDLIQDNSLLGGDLATQYLI
120 130 140 150 160 170
180 190 200 210 220 230
Unknow LANSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLR
. .: .::
P0ACQ3 DKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLL
180 190 200 210 220 230
>>P0ACQ0|RBSR_ECOLI Ribose operon repressor - Escherichi (330 aa)
s-w opt: 200 Z-score: 244.4 bits: 53.3 E(): 2.9e-06
Smith-Waterman score: 200; 27.9% identity (58.9% similar) in 190 aa overlap (5-188:3-187)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:. :.:.:.:::.:.:: ..: : : .: .. :: .: .:: . : :.
P0ACQ0 MATMKDVARLAGVSTSTVSHVIN---KDRFVSEAITAKVEAAIKELNYAPSALARSLK
10 20 30 40 50
70 80 90 100 110
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIE-AVKAMLSW
...:.:::.: : ... ... :. ::: .. :. . : ... ......
P0ACQ0 LNQTHTIGMLITASTNPFYSELVRGVERSCFERGY-SLVLCNTEGDEQRMNRNLETLMQK
60 70 80 90 100 110
120 130 140 150 160 170
Unknow QVD--WVVATGATNPDKISALCQQAGVPTVNLDL-PGSLSPSVISDN--YGGAKALTHKI
.:: .. : . .:.. . . :::: .: : . . ..:.:: :: : . :
P0ACQ0 RVDGLLLLCTETHQPSR-EIMQRYPTVPTVMMDWAPFDGDSDLIQDNSLLGGDLATQYLI
120 130 140 150 160 170
180 190 200 210 220 230
Unknow LANSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLR
. .: .::
P0ACQ0 DKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLL
180 190 200 210 220 230
>>P74866|GALR_SALTY HTH-type transcriptional regulator g (342 aa)
s-w opt: 200 Z-score: 244.2 bits: 53.3 E(): 3e-06
Smith-Waterman score: 200; 27.4% identity (58.7% similar) in 179 aa overlap (5-180:3-178)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:.:.:::...:: ..: . : . : .:: :: : .: : .: :
P74866 MATIKDVARLAGVSVATVSRVINDSPKASEAS-RLA--VTSAMESLSYHPNANARALA
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.. ....:... .. .::.... :..: . : . .: . . : .:.. .. .
P74866 QQATETLGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGNGYHNEQKERQAIEQLIRHR
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDK-ISALCQQA-GVPTVNLDLPGSLSPSV-ISDNYGGAKALTHKILAN
.:. . :: ...: .: :. .: ::: : ..: ::. : : : .
P74866 CAALVVHAKMIPDADLASLMKQIPGMVLINRILPGLEHRCVALDDRYGAWLATRHLIQQG
120 130 140 150 160 170
180 190 200 210 220 230
Unknow SARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTAC
.:
P74866 HTRIGYICSNHTISDAEDRLRGYYDALAESHIPANDRLVTFGEPDESGGEQAMTELLGRG
180 190 200 210 220 230
>>P36674|TRER_SALTY HTH-type transcriptional regulator t (315 aa)
s-w opt: 199 Z-score: 243.6 bits: 53.0 E(): 3.3e-06
Smith-Waterman score: 199; 24.4% identity (56.9% similar) in 197 aa overlap (3-199:4-189)
10 20 30 40 50
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASML
..:: :.:.::::. :.:: .::. . .: . :.: . ...:.. .:.: .
P36674 MQNRLTIKDIARLSGVGKSTVSRVLNN---ESGVSERTRERVEAVMNQHGFSPSRSARAM
10 20 30 40 50
60 70 80 90 100 110
Unknow RSKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSW
:.....:...:. . :. . .. . :.: ::. .. : : .: . .
P36674 RGQSDKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMESQFSPTLVMEHLGMLRRR
60 70 80 90 100 110
120 130 140 150 160 170
Unknow QVDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLSPSVISDNYGGAKALTHKILANSA
..: :: : :. . .:.. . : : :: :. :. . : ... ..
P36674 NIDGVVLFGFTGITEELIAPWKASLVLLARDAQG--FASVCYDDEGAIHILMQRLYEQGH
120 130 140 150 160 170
180 190 200 210 220 230
Unknow RRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACRS
: ..:.: .. ::
P36674 RN------ISFLGVPHSDITTGKRRHDAYLAFCKKHKLHPVAALPGLAMKQGYEHTASVI
180 190 200 210 220
>>Q9CF41|RBSR_LACLA Ribose operon repressor - Lactococcu (327 aa)
s-w opt: 197 Z-score: 240.7 bits: 52.6 E(): 4.7e-06
Smith-Waterman score: 197; 25.3% identity (60.7% similar) in 178 aa overlap (5-181:3-172)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: ..: .::: :.:: .. : .: . ::. : .. .. : .:. :.
Q9CF41 MTTIKQVALEAGVSKSTVSRFIAQNG---YVSDEAREKIERAIKKLNFRPNLSAQSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.::....:...: .: .: .:. ::. .:.: .. .. . : . .:.... .
Q9CF41 TKKNQLVGLLLPDISNPFFPMLAKGAEEFLKEKGYRVMLGNIGEKNQSEQDYLKVLIQSN
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLSP-SVISDNYGGAKALTHKILANSA
. ...: . : . .::: .: : : .:.::: .:.. .. :.. .:
Q9CF41 AAGIISTHDFKED-----FPDLDIPTVIVDRVGHKSNYGVFSDNESGGRLAAKVIVTAGA
120 130 140 150 160 170
180 190 200 210 220 230
Unknow RRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACRS
..
Q9CF41 KKVAVVSGPLNATNINNRFKSSIAYLKEKQVDFKAFYSQSYDFEEIQKEAREVLANEENF
180 190 200 210 220 230
>>Q8DAQ5|PURR_VIBVU HTH-type transcriptional repressor p (334 aa)
s-w opt: 193 Z-score: 235.5 bits: 51.6 E(): 9.2e-06
Smith-Waterman score: 193; 25.0% identity (57.2% similar) in 180 aa overlap (5-182:3-179)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:.:.:::...:: ..: : : .. ::: . ..: .:: . : :.
Q8DAQ5 MATIKDVARLAGVSTTTVSHVIN---KTRFVAEATQEKVMKAVDELNYAPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
. ...:::.. . : .:. . . : . ..: :. : : . . .. . .
Q8DAQ5 CNTTRTIGMLVTQSTNLFFSEVIDGVESYCYRQGYTLILCNTGGIYEKQRDYIRMLAEKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALC-QQAGVPTVNLDL-PGSLSPSVISDNYGGAKALTHKILANS
:: ... . ... . ..: .: : .: : : . . : :: . :. : : ..
Q8DAQ5 VDGILVMCSDLTEELREMLDKHADIPKVIMDWGPISSQADKIIDNSEEGGYLATKYLIDN
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACR
.. .
Q8DAQ5 GHTKIACLSGHFEKAACQERIQGFKRAMKEANITLNNEWILEGNFECDTAVMAADKIASW
180 190 200 210 220 230
>>Q7MJ57|PURR_VIBVY HTH-type transcriptional repressor p (334 aa)
s-w opt: 193 Z-score: 235.5 bits: 51.6 E(): 9.2e-06
Smith-Waterman score: 193; 25.0% identity (57.2% similar) in 180 aa overlap (5-182:3-179)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:.:.:::...:: ..: : : .. ::: . ..: .:: . : :.
Q7MJ57 MATIKDVARLAGVSTTTVSHVIN---KTRFVAEATQEKVMKAVDELNYAPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
. ...:::.. . : .:. . . : . ..: :. : : . . .. . .
Q7MJ57 CNTTRTIGMLVTQSTNLFFSEVIDGVESYCYRQGYTLILCNTGGIYEKQRDYIRMLAEKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALC-QQAGVPTVNLDL-PGSLSPSVISDNYGGAKALTHKILANS
:: ... . ... . ..: .: : .: : : . . : :: . :. : : ..
Q7MJ57 VDGILVMCSDLTEELREMLDKHADIPKVIMDWGPISSQADKIIDNSEEGGYLATKYLIDN
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACR
.. .
Q7MJ57 GHTKIACLSGHFEKAACQERIQGFKRAMKEANITLNNEWILEGNFECDTAVMAADKIASW
180 190 200 210 220 230
>>P03023|LACI_ECOLI Lactose operon repressor - Escherich (360 aa)
s-w opt: 193 Z-score: 234.9 bits: 51.6 E(): 9.9e-06
Smith-Waterman score: 193; 27.1% identity (60.3% similar) in 199 aa overlap (1-194:1-195)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: .:.::.:: .::: ..:: ..: . ..::: ::: : .: :: :..:
P03023 MKPVTLYDVAEYAGVSYQTVSRVVN---QASHVSAKTREKVEAAMAELNYIPNRVAQQLA
10 20 30 40 50
70 80 90 100 110
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRP-ELEIEAVKAMLSW
.:.: .::. . . ..:. .. : . : ... ..: : ::. .:.
P03023 GKQSLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGVEACKAAVHNLLAQ
60 70 80 90 100 110
120 130 140 150 160 170
Unknow QVD-WVVATGATNPDKISALCQQAGVPTVNLDLPGSLSP--SVISDNYGGAKALTHKILA
.:. .. . : :.. ..::.. ::. . .: :.: .. :.. .....:
P03023 RVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSDQ-TPINSIIFSHEDGTRLGVEHLVA
120 130 140 150 160 170
180 190 200 210 220 230
Unknow NSARRRGELA-PLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRT
. .. . :: ::. ...:
P03023 LGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSAMSGFQQTMQMLNEG
180 190 200 210 220 230
>>Q6LQB9|PURR_PHOPR HTH-type transcriptional repressor p (334 aa)
s-w opt: 189 Z-score: 230.4 bits: 50.7 E(): 1.8e-05
Smith-Waterman score: 189; 26.7% identity (56.7% similar) in 187 aa overlap (5-186:3-184)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:...:::...:: ..: : : .. .:: ... .:: . : :.
Q6LQB9 MATIKDVARMAGVSTTTVSHVIN---KTRFVAEATQKKVLAAVDDLNYAPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
. ...:::.. : : .:. . . ::. . : :. :. . . .. . .
Q6LQB9 CNTTKTIGMLVTKSTNPFFAEVIHGVEEYCYNAGYTLILCNTEGNLVKQRDYLRMLAEKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VD-WVVATGATNPDKISALCQQAGVPTVNLDLPGSLSPSV--ISDN--YGGAKALTHKIL
:: .: . . : .. : ... .: : .: : :: . :.:: :: : : ..
Q6LQB9 VDGLLVMCSDIDQDLLDLLARKSDLPMVIMDW-GPESPLTDKIQDNAEQGGYVATKH-FI
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ANSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRT
:. .. : :.
Q6LQB9 DNGHEKIGCLSGHSEKSTCRERLKGFNKAMAEAGITVNNNWIIDGDFECESAVEAANQYI
180 190 200 210 220 230
>>Q4QL70|PURR_HAEI8 HTH-type transcriptional repressor p (336 aa)
s-w opt: 189 Z-score: 230.3 bits: 50.7 E(): 1.8e-05
Smith-Waterman score: 189; 26.6% identity (55.5% similar) in 173 aa overlap (5-174:3-172)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:...:::...:: ..: : : .. : : .. .:. . : :.
Q4QL70 MATIKDVAKMAGVSTTTVSHVIN---KTRFVAKDTEEAVLSAIKQLNYSPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
. .. ::::. . ::. : . :: ..: .. :. :: . .. . . .
Q4QL70 VNTTKSIGMIVTTSEAPYFAEIIHSVEEHCYRQGYSLFLCNTQNDPEKVKNHLEMLAKKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VD-WVVATGATNPDKISALCQQAGVPTVNLDLPGSLSPSVISDNY--GGAKALTHKILAN
:: .: . . :... : . . .: : .: . . .::.:. :: : : :
Q4QL70 VDGLLVMCSEYTQDSLDLLSSFSTIPMVVMDWGPNANTDVIDDHSFDGGYLATKHLIECG
120 130 140 150 160 170
180 190 200 210 220 230
Unknow SARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTAC
Q4QL70 HKKIGIICGELNKTTARTRYEGFEKAMEEAKLTINPSWVLEGAFEPEDGYECMNRLLTQE
180 190 200 210 220 230
>>P77615|YCJW_ECOLI Uncharacterized HTH-type transcripti (332 aa)
s-w opt: 188 Z-score: 229.2 bits: 50.4 E(): 2.1e-05
Smith-Waterman score: 188; 27.7% identity (56.4% similar) in 195 aa overlap (5-188:4-193)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
::::.:...::: :.:: .:: :. :: . ::: : :: : :. : :
P77615 MSPTIYDIARVAGVSKSTVSRVLN---KQTNISPEAREKVLRAIEELQYQPNKLARALT
10 20 30 40 50
70 80 90 100 110
Unknow SKKSHVIGMIIPKYD------NRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVK
:. .: :.: . : .:. . . . :.:.:. .: : . : ... .
P77615 SSGFDAI-MVISTRSTKTTAGNPFFSEVLHAITAKAEEEGF-DVILQTSHNPAEDLQKCE
60 70 80 90 100 110
120 130 140 150 160 170
Unknow AMLSWQ-VDWVVATGATNPDKISALCQQAGVPTVNLD-LPGSLSP--SVISDNYGGAKAL
. .. . . .. .. ... : .. .:.: . . :. . :: .::.: . ::
P77615 SKIKQKMIKGIIMLSSPADESFFAQLDKYDIPVVVIGKVEGQYAHVYSVDTDNFGDSIAL
120 130 140 150 160 170
180 190 200 210 220
Unknow THKILANSARRRGEL-APLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIR
: .. .. . . : :::
P77615 TDALIESGHQNIACLHAPLDVHVSVDRVNGYKQSLAAHNIAVRDEWIVDGGYTHETALKA
180 190 200 210 220 230
>>Q87QW9|PURR_VIBPA HTH-type transcriptional repressor p (334 aa)
s-w opt: 188 Z-score: 229.1 bits: 50.4 E(): 2.1e-05
Smith-Waterman score: 188; 25.0% identity (57.4% similar) in 176 aa overlap (5-178:3-175)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:.:.:::...:: ..: : : .. ::: . ..: .:: . : :.
Q87QW9 MATIKDVARLAGVSTTTVSHVIN---KTRFVAEATQEKVMKAVDELNYAPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.....:::.. . : .:. . . : . ..: :. : : . . .. . .
Q87QW9 CNSTRTIGMLVTQSTNLFFSEVIDGVESYCYRQGYTLILCNTGGIYEKQRDYIRMLAEKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALC-QQAGVPTVNLDL-PGSLSPSVISDNYGGAKALTHKILANS
:: ... . .... . ... .: : .: : : . : :: . :. : : ..
Q87QW9 VDGILVMCSDLTEELKEMLDRHSDIPKVVMDWGPESSRADKIIDNSEEGGYLATKYLIDN
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACR
Q87QW9 GHTDIACLSGHFEKLACQERIAGFRRAMAEAKLPINEDWILEGNFECDTAVLVADKITAM
180 190 200 210 220 230
>>P37517|CCPB_BACSU Catabolite control protein B - Bacil (311 aa)
s-w opt: 187 Z-score: 228.4 bits: 50.2 E(): 2.3e-05
Smith-Waterman score: 187; 24.8% identity (58.3% similar) in 206 aa overlap (6-210:4-199)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
: ..:.:..::.:.:: .:: .. .: . . : .. .: :. :: : :
P37517 MANIKEIARLANVSVSTVSRVLN---HHPYVSEEKRKLVHQVMKELDYTPNRTAIDLI
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
:.:..:.:.: :. : .:.. . . : .. . : :..::. .. . . .
P37517 RGKTHTVGVILPYSDHPCFDKIVNGITKAAFQHEYATTLLPTNYNPDIEIKYLELLRTKK
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNP-DKISALCQQAGVPTVNLDLPGSLSPSVISDNYGGAKALTHKILANSA
.: .. :. .: :.: : :. : :.. . :... .. : : . . :
P37517 IDGLIITSRANHWDSILAY-QEYG-PVIACEDTGDIDVPCAFNDRKTAYAESFRYL----
120 130 140 150 160
180 190 200 210 220 230
Unknow RRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACRS
. ::. ..: :.: .:... :....
P37517 KSRGH-ENIAFTCVREADRSPSTADKAAAYKAVCGRLEDRHMLSGCNDMNDGELAAEHFY
170 180 190 200 210 220
240 250 260 270
Unknow GLAARRRCCRGYLLTRRYPWKGLCAGCRRWV
P37517 MSGRVPTAIYANSDEVAAGIHLFAKKNNWDVEIIGEGNTSISRVLGFPSLDLNLEQLGIA
230 240 250 260 270 280
>>P36944|RBSR_BACSU Ribose operon repressor - Bacillus s (326 aa)
s-w opt: 187 Z-score: 228.0 bits: 50.2 E(): 2.4e-05
Smith-Waterman score: 187; 30.4% identity (59.1% similar) in 181 aa overlap (5-181:3-173)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.: .:::...:: :: : . . .: . .: :. : :
P36944 MATIKDVAGAAGVSVATVSRNLNDNG---YVHEETRTRVIAAMAKLNYYPNEVARSLY
10 20 30 40 50
70 80 90 100 110
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFE-EMARERGLLPIITCTRRRPELEIEAVKAMLSW
...:..::...: : .: ..:. : :. :: : :. . .. . :.: .... .
P36944 KRESRLIGLLLPDITNPFFPQLARGAEDELNRE-GYRLIFGNSDEELKKELEYLQTFKQN
60 70 80 90 100 110
120 130 140 150 160 170
Unknow QVDWVVATGATN-PDKISALCQQAGV--PTVNLDLPGSLSPSVISDNYGGAKALTHKILA
.: ..: ::: :: : . .:. :.: :: .::: ::.: :.: .. :.
P36944 HVAGIIA--ATNYPD----LEEYSGMNYPVVFLDRTLEGAPSVSSDGYTGVKLAAQAIIH
120 130 140 150 160
180 190 200 210 220 230
Unknow NSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTA
....:
P36944 GKSQRITLLRGPAHLPTAQDRFNGALEILKQAEVDFQVIETASFSIKDAQSMAKELFASY
170 180 190 200 210 220
>>P96158|MALI_VIBFU Maltose regulon regulatory protein m (137 aa)
s-w opt: 180 Z-score: 226.1 bits: 48.6 E(): 3.1e-05
Smith-Waterman score: 180; 35.2% identity (64.8% similar) in 108 aa overlap (3-109:5-109)
10 20 30 40 50
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASM
:.:: ..:. .:::...:: .: :: : ::: :::. .: :: :: :.
P96158 MSSNKVTITEVAKHAGVSVTTVSMVL-GN--KGRISPDTIEKVNASVEALGYIRNRAAAN
10 20 30 40 50
60 70 80 90 100 110
Unknow LRSKKSHVIGMIIPKYDNRYFGSIAERFEEMARERG-LLPIITCTRRRPELEIEAVKAML
:::..:..::.:. .. : . .. . : ...: .: . : . ..:
P96158 LRSNSSEIIGLILKDISDPYDAEVTAGLSEEIEQQGYMLFLAQCGDSQEKFEHCVLTMAR
60 70 80 90 100 110
120 130 140 150 160 170
Unknow SWQVDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLSPSVISDNYGGAKALTHKILAN
P96158 QGVGGIAFCSIGENQQLNVD
120 130
>>Q45831|REGA_CLOSA HTH-type transcriptional regulator r (332 aa)
s-w opt: 181 Z-score: 220.3 bits: 48.8 E(): 6.4e-05
Smith-Waterman score: 181; 24.3% identity (55.2% similar) in 230 aa overlap (5-229:4-222)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
.: :.:. .::: ..:: .:: .. .:: .: :: : : :.
Q45831 MATSIKDVAREAGVSIATVSRVLN---DIDVVNEDTKKKVLDAIKELGYRPNIVARSLK
10 20 30 40 50
70 80 90 100 110
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRP-ELEIEAVKAMLSW
......::...: .:... :.. :... :: :. : : : ....
Q45831 TQRTKTIGILLPDISNQFYPEIVRGAEDVSNIYDY-NIILCNSDLDIEKEKEYLRVLKEK
60 70 80 90 100 110
120 130 140 150 160 170
Unknow QVDWVVATGATNPDKISALCQQAGVPTVNL---DLPGSLSPSVISDNYGGAKALTHKILA
.:: :. ... :.: : .. . :: . : : : ::: :: :. :. ..
Q45831 MVDGVIYMSSSLRDEILELINELDLKTVLVETRDKDGVL-PSVTIDNIKGSYDSTNLLI-
120 130 140 150 160 170
180 190 200 210 220 230
Unknow NSARRRGELAPLTFIGGRRATITP-ASVYAASTMRIASWGLACRRRIFWLPAIRKATLRT
..: . ..::: .. ... .. :.. . :. ....: .:.
Q45831 ----QKG-IKDIAFIGTKKDNMNAWGDRYVGYEKAMNEAGIKIDPELLYLDSIKVKSGYE
180 190 200 210 220
240 250 260 270
Unknow ACRSGLAARRRCCRGYLLTRRYPWKGLCAGCRRWV
Q45831 GIQHFLGLNKKFKGVVCASDDIAMGAINALRDNNMEVPKDVSVVGFNDNFAASIFYPKIT
230 240 250 260 270 280
>>P46456|PURR_HAEIN HTH-type transcriptional repressor p (336 aa)
s-w opt: 181 Z-score: 220.2 bits: 48.8 E(): 6.5e-05
Smith-Waterman score: 181; 26.0% identity (54.9% similar) in 173 aa overlap (5-174:3-172)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:...:::...:: ..: : : .. : : .. .:. . : :.
P46456 MATIKDVAKMAGVSTTTVSHVIN---KTRFVAKDTEEAVLSAIKQLNYSPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
. .. ::::. . ::. : . :: ..: . . . :: . .. . . .
P46456 VNTTKSIGMIVTTSEAPYFAEIIHSVEEHCYRQGYSLFCVTHKMDPEKVKNHLEMLAKKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VD-WVVATGATNPDKISALCQQAGVPTVNLDLPGSLSPSVISDNY--GGAKALTHKILAN
:: .: . . :... : . . .: : .: . . .::.:. :: : : :
P46456 VDGLLVMCSEYTQDSLDLLSSFSTIPMVVMDWGPNANTDVIDDHSFDGGYLATKHLIECG
120 130 140 150 160 170
180 190 200 210 220 230
Unknow SARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTAC
P46456 HKKIGIICGELNKTTARTRYEGFEKAMEEAKLTINPSWVLEGAFEPEDGYECMNRLLTQE
180 190 200 210 220 230
>>Q7VL44|PURR_HAEDU HTH-type transcriptional repressor p (339 aa)
s-w opt: 181 Z-score: 220.1 bits: 48.8 E(): 6.6e-05
Smith-Waterman score: 181; 23.8% identity (58.0% similar) in 181 aa overlap (5-183:3-180)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:.:.:::...:: ..: : : .. . .. : ... .:. . : :.
Q7VL44 MATIKDVAKLAGVSTTTVSHVIN---KTRFVAEETSKTVWNAVQKLNYSPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
. .. ::::: . ::. :. :: ..: .. :. .:: . . ... .
Q7VL44 INTTKSIGMIITTSEAPYFAEIVLAVEEHCYQQGYSLFLCNTQNEPEKIQNHLDMLIKKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLSPS--VISDNYGGAKALTHKILANS
:: ... . . : . ...: : .: . . .:.....:: :.... :.
Q7VL44 VDGILVMCSEYTRNSLELFNATNIPMVVMDWGKAHEKNDRIIDNSFNGAYLATRHLIDNG
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACR
. :
Q7VL44 HKDIGVISGYLTKTICSERLEGFIKAMKEANLPIREEWILEGDFEPESGFEQMNNLLRLD
180 190 200 210 220 230
>>Q0I4B4|PURR_HAES1 HTH-type transcriptional repressor p (333 aa)
s-w opt: 180 Z-score: 219.0 bits: 48.6 E(): 7.6e-05
Smith-Waterman score: 180; 24.2% identity (57.2% similar) in 194 aa overlap (5-191:3-193)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:...:::...:: ..: : : .. . ..: . .. .:. . : :.
Q0I4B4 MATIKDVAKMAGVSTTTVSHVIN---KTRFVAKETEQQVLQAIKNLNYSPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
. .. ::::. .. ::. : . ::. ..: .. :. :: . . . . .
Q0I4B4 VNTTKSIGMIVTTCETPYFAEIIHSVEELCYRQGYSLFLCNTQNNPEKIKNHLDMLAKKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGAT-NPDKISALCQQAGVPTVNLDL-PGSLSPSVISDN-YGGAKALTHKILAN
:: ... : . .... : .: : .: : . . ..:.:: ..:. :. .. :
Q0I4B4 VDGLLVMCAEYTQNSLNLLATFEDLPMVVMDWGPFNENTDLIQDNSFSGGYIATKYLIDN
120 130 140 150 160 170
180 190 200 210 220 230
Unknow SARR----RGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATL
. . ::: : .
Q0I4B4 GHKDIAIISGELKKTTAVMRYQGFEKAMQEANLAINPDWIMEGFFEPEDGYECMNKILVQ
180 190 200 210 220 230
>>Q9CN88|PURR_PASMU HTH-type transcriptional repressor p (334 aa)
s-w opt: 179 Z-score: 217.7 bits: 48.3 E(): 9e-05
Smith-Waterman score: 179; 24.6% identity (59.2% similar) in 179 aa overlap (5-181:3-178)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:...:::...:: ..: : : ..:. . : . .: .:. . : :.
Q9CN88 MATIKDVAKMAGVSTTTVSHVIN---KTRFVAAETEKLVLQAIQELNYSPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
. .. ::::. . . ::. : . :: ..: .. :. : . .. ... .
Q9CN88 VNTTKSIGMIVTSSEAPYFAEIIHAVEEHCYRQGYSLFLCNTQNNVEKIKNHLEMLIKKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGAT-NPDKISALCQQAGVPTVNLDL-PGSLSPSVISDNYGGAKALTHKILANS
:: ... : . :... : . ...: : .: : . ..:.:. . :. : : .
Q9CN88 VDGILVMCAEYTQDSLDLLANFTSLPLVVMDWGPDNKHTDIIQDHSFEGGYLATKYLIDH
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACR
...
Q9CN88 GHKDIGIIAGELTKTTAKTRYEGFIKAMNEAGLKINPDWVMEGFFEPEDGYECMNKILAQ
180 190 200 210 220 230
>>P0A4T1|MALR_STRPN HTH-type transcriptional regulator m (328 aa)
s-w opt: 177 Z-score: 215.3 bits: 47.8 E(): 0.00012
Smith-Waterman score: 177; 26.4% identity (55.7% similar) in 201 aa overlap (4-195:3-191)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
.:: :.:. .::: :.:. .... : :: . ..: . .: .: : .: :
P0A4T1 MPVTIKDVAKAAGVSPSTVTRVIQN---KSTISDETKKRVRKAMKELNYHPNLNARSLV
10 20 30 40 50
70 80 90 100 110
Unknow SKKSHVIGMIIPK-----YDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKA
:. ..:::...: :.: .: :. . . ..: : :. . . : ...:..
P0A4T1 SSYTQVIGLVLPDDSDAFYQNPFFPSVLRGISQVASENHYAIQIATGKDEKE-RLNAISQ
60 70 80 90 100 110
120 130 140 150 160 170
Unknow ML-SWQVDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLSPSVI---SDNYGGAKALT
:. . .:: .. : . : . : . : : : :::: . .:: .. :
P0A4T1 MVYGKRVDGLIFLYAQEEDPLVKLVAEEQFPF--LILGKSLSPFIPLVDNDNVQAGFDAT
120 130 140 150 160 170
180 190 200 210 220 230
Unknow HKILANSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKA
. .. .. .: ..:::: .
P0A4T1 EYFIKKGCKR------IAFIGGSKKLFVTKDRLTGYEQALKHYKLTTDNNRIYFADEFLE
180 190 200 210 220
>>P0A4T2|MALR_STRR6 HTH-type transcriptional regulator m (328 aa)
s-w opt: 177 Z-score: 215.3 bits: 47.8 E(): 0.00012
Smith-Waterman score: 177; 26.4% identity (55.7% similar) in 201 aa overlap (4-195:3-191)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
.:: :.:. .::: :.:. .... : :: . ..: . .: .: : .: :
P0A4T2 MPVTIKDVAKAAGVSPSTVTRVIQN---KSTISDETKKRVRKAMKELNYHPNLNARSLV
10 20 30 40 50
70 80 90 100 110
Unknow SKKSHVIGMIIPK-----YDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKA
:. ..:::...: :.: .: :. . . ..: : :. . . : ...:..
P0A4T2 SSYTQVIGLVLPDDSDAFYQNPFFPSVLRGISQVASENHYAIQIATGKDEKE-RLNAISQ
60 70 80 90 100 110
120 130 140 150 160 170
Unknow ML-SWQVDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLSPSVI---SDNYGGAKALT
:. . .:: .. : . : . : . : : : :::: . .:: .. :
P0A4T2 MVYGKRVDGLIFLYAQEEDPLVKLVAEEQFPF--LILGKSLSPFIPLVDNDNVQAGFDAT
120 130 140 150 160 170
180 190 200 210 220 230
Unknow HKILANSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKA
. .. .. .: ..:::: .
P0A4T2 EYFIKKGCKR------IAFIGGSKKLFVTKDRLTGYEQALKHYKLTTDNNRIYFADEFLE
180 190 200 210 220
>>Q65TP0|PURR_MANSM HTH-type transcriptional repressor p (334 aa)
s-w opt: 176 Z-score: 213.9 bits: 47.6 E(): 0.00015
Smith-Waterman score: 176; 25.4% identity (56.9% similar) in 197 aa overlap (5-195:3-194)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:...:::...:: ..: : :... . . : . .:. . : :.
Q65TP0 MATIKDVAKMAGVSTTTVSHVIN---KTRHVADETKQTVLDAIKALNYSPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
. .. :::.. .. ::. : . ::. ..: .. :. :. . .. . . .
Q65TP0 VNTTKSIGMVVTTSETPYFAEIIHAVEEQCYRQGYSLFLCNTQNDPDKLKNHLEMLAKKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQ-AGVPTVNLDLPGSLSPS--VISDNY--GGAKALTHKIL
:: :.. . : : .. . .: : .: : ..:. .: :: :: : : ..
Q65TP0 VDGVLVMCSEYKDDSRDLLKSFSYLPIVIMDW-GPVNPDTDLILDNSFEGGYLAGKH-LV
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ANSARRRGEL-APLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLR
:. .. : : : :: . ...
Q65TP0 DNGHKKIGYLSAELTKVTAKQRYQGFIKALSEANVEMKSEWLFEGSFEPEDGYECMNRLL
180 190 200 210 220 230
>>P24242|ASCG_ECOLI HTH-type transcriptional regulator a (337 aa)
s-w opt: 176 Z-score: 213.8 bits: 47.6 E(): 0.00015
Smith-Waterman score: 176; 24.1% identity (56.0% similar) in 232 aa overlap (5-227:4-226)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:. ..:. .::: ..:: .:.:: .: . ..: . .::.:: : : :
P24242 MMTTMLEVAKRAGVSKATVSRVLSGNG---YVSQETKDRVFQAVEESGYRPNLLARNLS
10 20 30 40 50
70 80 90 100 110
Unknow SKKSHVIGMIIPK--YDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLS
.:.....:... . : . ::. . . .::.:.: ... .. : : .:.. .:.
P24242 AKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLD
60 70 80 90 100 110
120 130 140 150 160 170
Unknow WQVDWV-VATGATNPDKISALCQQAGVPTVNLD--LPGSLSPSVISDNYGGAKALTHKIL
. : . . . :.:. . . . : . :. : . : :: :. . . . :
P24242 LRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSFNAVAE-L
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ANSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIF----WLPAIRKA
:.... :.: :. : . : :. .:. :.: .... : ::
P24242 INAGHQ--EIA---FLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAE
180 190 200 210 220 230
240 250 260 270
Unknow TLRTACRSGLAARRRCCRGYLLTRRYPWKGLCAGCRRWV
P24242 GVEMLLERGAKFSALVASNDDMAIGAMKALHERGVAVPEQVSVIGFDDIAIAPYTVPALS
240 250 260 270 280 290
>>P74892|SCRR_STAXY Sucrose operon repressor - Staphyloc (320 aa)
s-w opt: 175 Z-score: 212.9 bits: 47.4 E(): 0.00016
Smith-Waterman score: 175; 25.0% identity (59.8% similar) in 164 aa overlap (1-164:1-158)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
::.:. :.:...::: :.:: ::.. .: : .:. .: .:. : :. :. ::
P74892 MKNIA--DIAKIAGVSKSTVSRYLNNG----SVSLKTQQKLDEIIRENDYQPNQFAQSLR
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
......:: :::.... . . . . . ... : .:::.:.... .
P74892 ARRTNMIGAIIPRMNSFAVDETIKGVKTVCDQLNYSLLLNYTNLNIQLEIDALETFYRSK
60 70 80 90 100 110
130 140 150 160 170 180
Unknow VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLSPSVISDNYGGAKALTHKILANSAR
:: .: .. :. . .. .::.. . . .: ..:
P74892 VDGIVFMATEITDQHLEVINKINVPVIIVGQAHDDLHCIIHNDYQAGYLVGDMLGQQGYN
120 130 140 150 160 170
190 200 210 220 230 240
Unknow RRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACRSG
P74892 DIKFFGVTESDIAVGVQRKEGLIAGLEAHNIQPEISLTSFNYQEAMVDVVEALQAYPHYD
180 190 200 210 220 230
>>Q56201|MALR_STAXY HTH-type transcriptional regulator m (337 aa)
s-w opt: 175 Z-score: 212.5 bits: 47.4 E(): 0.00017
Smith-Waterman score: 175; 27.1% identity (58.0% similar) in 181 aa overlap (4-175:2-177)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
.:: :.:. ..::.:.:: ...:: ::: . ::: . .: :: : :
Q56201 MVTIKDIAQAANVSTSTVSRVISGN---PRISMQTREKVKATMKSFNYQPNRAARTLA
10 20 30 40 50
70 80 90 100 110
Unknow SKKSHVIGMI-----IPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKA
.:.:..::.: : .: . .. . ...: : : . :.:.: :.
Q56201 TKQSNTIGIIQKSASIEDSQNPFVLDVLSGIFSKCKNHGYATISTTKGQSIEIELE-VQE
60 70 80 90 100 110
120 130 140 150 160 170
Unknow MLSWQ-VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLSPSVI---SDNYGGAKALT
:. .. :: .. . . : : . .. ..: : . : . . ..: .:: .....::
Q56201 MIHYHSVDGFIVLYSKKSDPIIDILKSHAMPYVIIGKPLT-DDDIIHIDNDNVSASQSLT
120 130 140 150 160 170
180 190 200 210 220 230
Unknow HKILANSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKA
. ..
Q56201 RYLIDKGHNKFLFVAETGNYEVVKDRIAGHLNAIEQTDSVTDIVYFAKNRHYIRSFFQDL
180 190 200 210 220 230
>>Q9KRC1|PURR_VIBCH HTH-type transcriptional repressor p (336 aa)
s-w opt: 174 Z-score: 211.3 bits: 47.1 E(): 0.0002
Smith-Waterman score: 174; 24.6% identity (56.7% similar) in 187 aa overlap (5-189:3-184)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:.:.:::...:: ..: : : .. ::: . ... .:: . : :.
Q9KRC1 MATIKDVARLAGVSTTTVSHVIN---KTRFVAETTQEKVMEAVKQLNYAPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
. ...:::.. . : .:. . . : . ..: :. : : . . .. . .
Q9KRC1 CNTTRTIGMLVTQSTNLFFSEVIDGVESYCYRQGYTLILCNTGGIYEKQRDYIRMLAEKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQ-QAGVPTVNLDL-PGSLSPSVISDNYGGAKALTHKILANS
:: ... . .... . . . .: : .: : . . : :: . :. : :..
Q9KRC1 VDGILVMCSDLTQELQDMLDAHKDIPKVVMDWGPETSHADKIIDNSEEGGYLATKYLTD-
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACR
: . :.: :.
Q9KRC1 -RGHTEIACLSGHFVKAACQERIQGFRRAMAEAKLTVNEDWILEGNFECDTAVLAADKII
180 190 200 210 220 230
>>P27871|ENDR_PAEPO Probable HTH-type transcriptional re (340 aa)
s-w opt: 174 Z-score: 211.2 bits: 47.1 E(): 0.00021
Smith-Waterman score: 174; 23.7% identity (59.1% similar) in 198 aa overlap (5-199:4-195)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:. ..:: .::: :.:: .:. .. .: . .:. . :. .: :. : :.
P27871 MVTTMKEVAERAGVSKSTVSQFLQKRYN--YMSENTKKKIEQAIEDLSYIPNEVARSLK
10 20 30 40 50
70 80 90 100 110
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPEL-EIEAVKAMLSW
.::. ..:.: .:. ... .:. . ... .:.:. : : . :..:..
P27871 QKKTFIVGVISSTILSRFTTEVVRAIEDECQLENV-QVIVCNTDDDSLKEKKYVQSMIAR
60 70 80 90 100 110
120 130 140 150 160 170
Unknow QVDWVVATGATNPDKISALCQQAGVPTVNLDLP-GSLS-PSVISDNYGGAKALTHKILAN
::: .. . . :. . . : : : .: :: .:. .: ...: .. .. .
P27871 QVDGLIIFPTEENKKLYVSLVKNGYPFVFVDRKIDELSVDTVLLNNEKASRACVEALIEH
120 130 140 150 160 170
180 190 200 210 220 230
Unknow SARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTAC
. ..... .:: :..: :
P27871 G---HNNIGIITFPLGKKAITTRSERLSGYRNTLGKHDIPVNENYIKSGRLDEMPNLIGQ
180 190 200 210 220 230
>>Q5E4H9|PURR_VIBF1 HTH-type transcriptional repressor p (337 aa)
s-w opt: 172 Z-score: 208.7 bits: 46.7 E(): 0.00028
Smith-Waterman score: 172; 26.4% identity (56.9% similar) in 174 aa overlap (5-174:3-173)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:.:..::...:: ..: : : .. ..: . .:: .:: . : :.
Q5E4H9 MATIKDVAKLAAVSTTTVSHVIN---KTRFVAEATQKRVWEAVEELNYAPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
. ...:::.. . : .:. . . :.. ..: .. :. : . . .. . .
Q5E4H9 CNTTRTIGMLVTQSFNPFFAEVMHGVENYCYKQGYTLFMCNTEGDLEKQKHYLRMLAEKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VD-WVVATGATNPDKISALCQQAGVPTVNLDL-PGSLSPSVISDNY--GGAKALTHKILA
:: .: . : . .. : ... .: : .: : : . : :: :: : : :
Q5E4H9 VDGLLVMCSDLNEQLLTLLEKNTELPMVIMDWGPDSPRTDKIIDNSEEGGYLATKHLIEN
120 130 140 150 160 170
180 190 200 210 220 230
Unknow NSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTA
Q5E4H9 GHTHIACITGQADKVTCKERVRGFERAHIDANLTFNPEWILEGDFECASASRAVDKILAI
180 190 200 210 220 230
>>Q1C774|PURR_YERPA HTH-type transcriptional repressor p (341 aa)
s-w opt: 171 Z-score: 207.3 bits: 46.4 E(): 0.00034
Smith-Waterman score: 171; 25.0% identity (54.1% similar) in 220 aa overlap (5-214:3-215)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:. .:::...:: ..: : : .. . : .: :. . : :.
Q1C774 MATIKDVAKHAGVSTTTVSHVIN---KTRFVAENTKAAVWAAIKELHYSPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.... ::.. . . ::. . : :. .: .: :. . . .: :::. .
Q1C774 VNHTKSIGLLATSSEAPYFAEVIEAVENSCYSKGYT-LILCNSHNNLDKQKAYLAMLAQK
60 70 80 90 100 110
130 140 150 160 170
Unknow -VDWVVATGATNPDKISALCQQA-GVPTVNLDLP---GSLSPSVISDNYGGAKALTHKIL
:: ... . ::.. .. .. ..: : .: :... :.:.. . :. :. . :
Q1C774 RVDGLLVMCSEYPDQLLGMLEDYRNIPMVVMDWGTARGDFTDSIIDNAFEGGY-LAGRYL
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ANSARRR-----GELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRK
. ..: :.:: : :::. . : : .: :
Q1C774 IERGHRDIGAIPGQLARNTG-GGRHQGFLKALEEANIPVR-EEWIVQGDSEPESGYKAMH
180 190 200 210 220 230
240 250 260 270
Unknow ATLRTACRSGLAARRRCCRGYLLTRRYPWKGLCAGCRRWV
Q1C774 QILTQKHRPTAVFCGGDIMAMGAICAADELGLRVPQDISVIGYDNVRNARYFSPALTTIH
240 250 260 270 280 290
>>Q1CIL0|PURR_YERPN HTH-type transcriptional repressor p (341 aa)
s-w opt: 171 Z-score: 207.3 bits: 46.4 E(): 0.00034
Smith-Waterman score: 171; 25.0% identity (54.1% similar) in 220 aa overlap (5-214:3-215)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:. .:::...:: ..: : : .. . : .: :. . : :.
Q1CIL0 MATIKDVAKHAGVSTTTVSHVIN---KTRFVAENTKAAVWAAIKELHYSPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.... ::.. . . ::. . : :. .: .: :. . . .: :::. .
Q1CIL0 VNHTKSIGLLATSSEAPYFAEVIEAVENSCYSKGYT-LILCNSHNNLDKQKAYLAMLAQK
60 70 80 90 100 110
130 140 150 160 170
Unknow -VDWVVATGATNPDKISALCQQA-GVPTVNLDLP---GSLSPSVISDNYGGAKALTHKIL
:: ... . ::.. .. .. ..: : .: :... :.:.. . :. :. . :
Q1CIL0 RVDGLLVMCSEYPDQLLGMLEDYRNIPMVVMDWGTARGDFTDSIIDNAFEGGY-LAGRYL
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ANSARRR-----GELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRK
. ..: :.:: : :::. . : : .: :
Q1CIL0 IERGHRDIGAIPGQLARNTG-GGRHQGFLKALEEANIPVR-EEWIVQGDFEPESGYKAMH
180 190 200 210 220 230
240 250 260 270
Unknow ATLRTACRSGLAARRRCCRGYLLTRRYPWKGLCAGCRRWV
Q1CIL0 QILTQKHRPTAVFCGGDIMAMGAICAADELGLRVPQDISVIGYDNVRNARYFSPALTTIH
240 250 260 270 280 290
>>Q7CIS2|PURR_YERPE HTH-type transcriptional repressor p (341 aa)
s-w opt: 171 Z-score: 207.3 bits: 46.4 E(): 0.00034
Smith-Waterman score: 171; 25.0% identity (54.1% similar) in 220 aa overlap (5-214:3-215)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:. .:::...:: ..: : : .. . : .: :. . : :.
Q7CIS2 MATIKDVAKHAGVSTTTVSHVIN---KTRFVAENTKAAVWAAIKELHYSPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.... ::.. . . ::. . : :. .: .: :. . . .: :::. .
Q7CIS2 VNHTKSIGLLATSSEAPYFAEVIEAVENSCYSKGYT-LILCNSHNNLDKQKAYLAMLAQK
60 70 80 90 100 110
130 140 150 160 170
Unknow -VDWVVATGATNPDKISALCQQA-GVPTVNLDLP---GSLSPSVISDNYGGAKALTHKIL
:: ... . ::.. .. .. ..: : .: :... :.:.. . :. :. . :
Q7CIS2 RVDGLLVMCSEYPDQLLGMLEDYRNIPMVVMDWGTARGDFTDSIIDNAFEGGY-LAGRYL
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ANSARRR-----GELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRK
. ..: :.:: : :::. . : : .: :
Q7CIS2 IERGHRDIGAIPGQLARNTG-GGRHQGFLKALEEANIPVR-EEWIVQGDFEPESGYKAMH
180 190 200 210 220 230
240 250 260 270
Unknow ATLRTACRSGLAARRRCCRGYLLTRRYPWKGLCAGCRRWV
Q7CIS2 QILTQKHRPTAVFCGGDIMAMGAICAADELGLRVPQDISVIGYDNVRNARYFSPALTTIH
240 250 260 270 280 290
>>Q66A32|PURR_YERPS HTH-type transcriptional repressor p (341 aa)
s-w opt: 171 Z-score: 207.3 bits: 46.4 E(): 0.00034
Smith-Waterman score: 171; 25.0% identity (54.1% similar) in 220 aa overlap (5-214:3-215)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:. .:::...:: ..: : : .. . : .: :. . : :.
Q66A32 MATIKDVAKHAGVSTTTVSHVIN---KTRFVAENTKAAVWAAIKELHYSPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.... ::.. . . ::. . : :. .: .: :. . . .: :::. .
Q66A32 VNHTKSIGLLATSSEAPYFAEVIEAVENSCYSKGYT-LILCNSHNNLDKQKAYLAMLAQK
60 70 80 90 100 110
130 140 150 160 170
Unknow -VDWVVATGATNPDKISALCQQA-GVPTVNLDLP---GSLSPSVISDNYGGAKALTHKIL
:: ... . ::.. .. .. ..: : .: :... :.:.. . :. :. . :
Q66A32 RVDGLLVMCSEYPDQLLGMLEDYRNIPMVVMDWGTARGDFTDSIIDNAFEGGY-LAGRYL
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ANSARRR-----GELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRK
. ..: :.:: : :::. . : : .: :
Q66A32 IERGHRDIGAIPGQLARNTG-GGRHQGFLKALEEANIPVR-EEWIVQGDFEPESGYKAMH
180 190 200 210 220 230
240 250 260 270
Unknow ATLRTACRSGLAARRRCCRGYLLTRRYPWKGLCAGCRRWV
Q66A32 QILTQKHRPTAVFCGGDIMAMGAICAADELGLRVPQDISVIGYDNVRNARYFSPALTTIH
240 250 260 270 280 290
>>P44329|RBSR_HAEIN Ribose operon repressor - Haemophilu (332 aa)
s-w opt: 170 Z-score: 206.3 bits: 46.2 E(): 0.00039
Smith-Waterman score: 170; 25.0% identity (60.6% similar) in 180 aa overlap (5-182:3-177)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:. :.:.:. ::.:.:: ..::. : .: .. ::: ::. : .:. . : :.
P44329 MATMKDIARLAQVSTSTVSHVINGS---RFVSDEIREKVMRIVAELNYTPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.....::... .: .:. . :.. .. ::. : . . ..... :
P44329 VRETKTIGLLVTATNNPFFAEVMAGVEQYCQKNQYNLIIATTGGDAKRLQQNLQTLMHKQ
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQA-GVPTVNLDLPGS-LSPSVISDNYGGAKALTHKILANS
:: .. . ....: . : ..: : .: . :. . : .: . . :. : : ..
P44329 VDGLLL--MCGDSRFQADIELAISLPLVVMDWWFTELNADKILENSALGGYLATKALIDA
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACR
..:.
P44329 GHRKIGIITGNLKKSVAQNRLQGYKNALSEAKIALNPHWIVESHFDFEGGVLGIQSLLTQ
180 190 200 210 220 230
>>P72396|MALR_STRCO HTH-type transcriptional regulator m (344 aa)
s-w opt: 159 Z-score: 192.0 bits: 43.6 E(): 0.0024
Smith-Waterman score: 159; 23.0% identity (53.1% similar) in 196 aa overlap (8-195:7-196)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:.: .::: ..:: .::: : ..: ..: . :: .. ::
P72396 MTTRLADIAAQAGVSEATVSRVLNG---KPGVAATTRQSVLAALDVLGY---ERPVRLR
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
... ..:.: :. .: : ..:. . . ..: :... : : .. ...
P72396 QRSEGLVGLITPELENPIFPALAQVIGQALTRQGYTPVLATQTPGGSTEDELTEMLVDRG
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISAL-----CQQAGVPTVNLDLPGSL--SPSVISDNYGGAK-ALTH
: .. ... . : . . . ::: : .: .: .: . :. .. . :.::
P72396 VAGIIYVSGLHADTTADMQRYERLRAQGVPFVLVDGFSSQVQAPFISPDDRAAMSLAVTH
120 130 140 150 160 170
180 190 200 210 220 230
Unknow KILANSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKAT
. . .: :.: :. .:
P72396 LVSLGHTRIGLALGPKRFVPVQRKIEGFVRTVQDQLGLSAETVEKELVQHSLYTLEGGQA
180 190 200 210 220 230
>>P72469|REG1_STRLI HTH-type transcriptional regulator r (345 aa)
s-w opt: 156 Z-score: 188.2 bits: 42.9 E(): 0.0039
Smith-Waterman score: 156; 22.4% identity (53.1% similar) in 196 aa overlap (8-195:7-196)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:.: .::: ..:: .::: : ..: ..: . :: .. ::
P72469 MTTRLADIAAQAGVSEATVSRVLNG---KPGVAATTRQSVLAALDVLGY---ERPVRLR
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
... ..:.. :. .: : ..:. . . ..: :... : : .. ...
P72469 RRSAGLVGLVTPELENPIFPAFAQVIGQALTRQGYTPVLATQTPGGSTEDELTEMLVDRG
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQA-----GVPTVNLDLPGSL--SPSVISDNYGGAK-ALTH
: .. ... . : . . . ::: : .: .: .: . :. .. . :.::
P72469 VAGIIYVSGLHADTTADMQRYERLGGRGVPFVLVDGFSSQVQAPFISPDDRAAMSLAVTH
120 130 140 150 160 170
180 190 200 210 220 230
Unknow KILANSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKAT
. . .: :.: :. .:
P72469 LVSLGHTRIGLALGPKRFVPVQRKIEGFVRTVQEPVGAERRSTVEKELVQHSLYTLEGGQ
180 190 200 210 220 230
>>Q9CPA2|RBSR_PASMU Ribose operon repressor - Pasteurell (337 aa)
s-w opt: 154 Z-score: 185.8 bits: 42.4 E(): 0.0053
Smith-Waterman score: 154; 23.7% identity (60.1% similar) in 173 aa overlap (5-174:3-171)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:. :.:... ::.:.:: ..:.. : .: .. .:: ....: .:. . : :.
Q9CPA2 MATMKDIARIAKVSTSTVSHVINNS---RFVSDEIRDKVMHVVKELNYTPSALARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
:....::... .: .: .. :.. ... :.. :. : . ...... :
Q9CPA2 VKETKTIGLLVTATNNPFFTEVVSGVEQYCHQHHYNLILSNTEGDTERLRHNLQTLIQKQ
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQAGVPTVNLDL-PGSLSPSVISDN--YGGAKALTHKILAN
:: .. . .:. . ...: : .: : . . : .: ::: : . :
Q9CPA2 VDGLLLMCSDARIQIGKDLN-VNLPFVVMDWWPTEEKADKIYENSEYGGYLATKQLIEKG
120 130 140 150 160 170
180 190 200 210 220 230
Unknow SARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTAC
Q9CPA2 HQHIAIITGNLKKSLAQNRLDGYKKALKEANIPLREDCIIESHFDFEGGKRGMEKVLALQ
180 190 200 210 220 230
>>Q6D5W3|PURR_ERWCT HTH-type transcriptional repressor p (341 aa)
s-w opt: 153 Z-score: 184.5 bits: 42.2 E(): 0.0063
Smith-Waterman score: 153; 22.5% identity (57.8% similar) in 187 aa overlap (5-185:3-184)
10 20 30 40 50
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIA-EEQGYAINRQASML
:: :.:. .:::...:: ..: : :. :. .. ..: : .: :. . : :
Q6D5W3 MATIKDVAKRAGVSTTTVSHVIN----KTRFVAEETKAAVRAAIKELHYSPSAVARSL
10 20 30 40 50
60 70 80 90 100 110
Unknow RSKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSW
. .... ::.. . . ::. : : :. .: .. :. . . .: .::.
Q6D5W3 KVNHTKSIGLLATSSEAPYFAEIIEAVENSCYAKGYT-LVLCNSHNDIGKQRAYLSMLAQ
60 70 80 90 100 110
120 130 140 150 160 170
Unknow Q-VDWVVATGATNPDKISALCQQA-GVPTVNLD---LPGSLSPSVISDNYGGAKALTHKI
. :: ... : : .. .. .. ..: : .: . .... ..:.. . :. . .
Q6D5W3 KRVDGLLVMCAEYPPELLGMLEDYRSIPMVVMDWGQMHNDFTDTIIDNAFEGGYMAGRYL
120 130 140 150 160 170
180 190 200 210 220 230
Unknow LANSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLR
. . : : .
Q6D5W3 IERGHRDIGAIPGIQERNTGSGRYLGFLKALKEADITVRNEWVVQGDFEPESGYKAMHQI
180 190 200 210 220 230
>>Q7N3V8|PURR_PHOLL HTH-type transcriptional repressor p (341 aa)
s-w opt: 151 Z-score: 181.9 bits: 41.7 E(): 0.0088
Smith-Waterman score: 151; 22.7% identity (54.5% similar) in 198 aa overlap (5-195:3-196)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:. .:::...:: ..: : : .. : . .:. . : :.
Q7N3V8 MATIKDVAKHAGVSTTTVSHVIN---KTRFVAEDTKAAVWAAIKALNYSPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.... ::.. . . ::. : : :. .: .: :. . . .: :::. .
Q7N3V8 VNHTKSIGLLATSSEAPYFAEIIESVENSCYSKGYT-LILCNSHNNIDKQKAYLAMLAQK
60 70 80 90 100 110
130 140 150 160 170
Unknow -VDWVVATGATNPDKISALCQQA-GVPTVNLDLP---GSLSPSVISDNYGGAKALTHKIL
:: .. . :... .. .. ..: : .: .... ..:.. . :. . ..
Q7N3V8 RVDGLLIMCSEYPEQLLGMLEDYRNIPMVVMDWGQARSDFTDTIIDNAFHGGYLAGRYLI
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ANSARRRGEL-APLTF-IGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATL
. : : . .::. :: :
Q7N3V8 ERGHRDIGAIPGPLARNTGGGRHQGFLKALKEANIPIKEEWVIQGDFEPESGYKAMHQIL
180 190 200 210 220 230
>>O31690|YKVZ_BACSU Uncharacterized HTH-type transcripti (321 aa)
s-w opt: 147 Z-score: 177.3 bits: 40.8 E(): 0.016
Smith-Waterman score: 147; 26.5% identity (54.0% similar) in 189 aa overlap (6-183:4-184)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
: :.:: .:::...:: ..:.. .: ..: . : :. : .: :
O31690 MANIKDIAEKAGVSVTTVSRVINNH---PYVSEDKRKRVFEAMESLEYTRNIHAVHLS
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
. :..::...: . ::. . . . : : :. . : . . :: :.. . . :
O31690 KGFSNMIGVVLPTVNLPYFAELIAGIADAAAESGVHLSLFQTNYEVQKEIFALSQLKQRQ
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVV-ATGATNPDKISA------LCQQ---AGVPTVNLDLPGSLSPSVISDNYGGAKAL
:: .. . : .:. :::. : ::... .. .. .: ::.
O31690 VDGLIFCSKALADEKLMEWEGPILLCQNSDNARFPTISIPHQEAFRNGL---DYLIAKG-
120 130 140 150 160 170
180 190 200 210 220
Unknow THKILANS-ARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIR
:: .: ::..:
O31690 -HKKIAICLARKKGMNSHFRIKAYKEALEEIGEAFREDWVIEKAITINDGKALFHKWNTW
180 190 200 210 220 230
>>P0ACN7|CYTR_ECOLI HTH-type transcriptional repressor c (341 aa)
s-w opt: 147 Z-score: 176.8 bits: 40.8 E(): 0.017
Smith-Waterman score: 147; 24.3% identity (54.1% similar) in 185 aa overlap (5-186:11-191)
10 20 30 40 50
Unknow MKKITIYDLAELSGVSASAVS-AILNGNWKKRRISAKLAEKVTRIAEEQGYAIN
:. :.: . ::...:: :..: . ..: ..: . :.: :: .
P0ACN7 MKAKKQETAATMKDVALKAKVSTATVSRALMNPD----KVSQATRNRVEKAAREVGYLPQ
10 20 30 40 50
60 70 80 90 100 110
Unknow RQASMLRSKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAV
.. .. ..:..: .:.: . .:. : . .: : ..: : .: .. . : .
P0ACN7 PMGRNVKRNESRTILVIVPDICDPFFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFI
60 70 80 90 100 110
120 130 140 150 160 170
Unknow KAMLSWQVDWVVATGATNPDKISALCQQAGVPTV--NLDLPGSLSPSVISDNYGGAKALT
... :.: .. :. : : :. : : : : :.: :: .: .
P0ACN7 DLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELELPTVHIDNLTAAFDAV
120 130 140 150 160 170
180 190 200 210 220 230
Unknow HKILANSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKA
. . .. .: : .:
P0ACN7 NYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAM
180 190 200 210 220 230
>>P0ACN8|CYTR_ECOL6 HTH-type transcriptional repressor c (341 aa)
s-w opt: 147 Z-score: 176.8 bits: 40.8 E(): 0.017
Smith-Waterman score: 147; 24.3% identity (54.1% similar) in 185 aa overlap (5-186:11-191)
10 20 30 40 50
Unknow MKKITIYDLAELSGVSASAVS-AILNGNWKKRRISAKLAEKVTRIAEEQGYAIN
:. :.: . ::...:: :..: . ..: ..: . :.: :: .
P0ACN8 MKAKKQETAATMKDVALKAKVSTATVSRALMNPD----KVSQATRNRVEKAAREVGYLPQ
10 20 30 40 50
60 70 80 90 100 110
Unknow RQASMLRSKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAV
.. .. ..:..: .:.: . .:. : . .: : ..: : .: .. . : .
P0ACN8 PMGRNVKRNESRTILVIVPDICDPFFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFI
60 70 80 90 100 110
120 130 140 150 160 170
Unknow KAMLSWQVDWVVATGATNPDKISALCQQAGVPTV--NLDLPGSLSPSVISDNYGGAKALT
... :.: .. :. : : :. : : : : :.: :: .: .
P0ACN8 DLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELELPTVHIDNLTAAFDAV
120 130 140 150 160 170
180 190 200 210 220 230
Unknow HKILANSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKA
. . .. .: : .:
P0ACN8 NYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAM
180 190 200 210 220 230
>>P0ACN9|CYTR_ECO57 HTH-type transcriptional repressor c (341 aa)
s-w opt: 147 Z-score: 176.8 bits: 40.8 E(): 0.017
Smith-Waterman score: 147; 24.3% identity (54.1% similar) in 185 aa overlap (5-186:11-191)
10 20 30 40 50
Unknow MKKITIYDLAELSGVSASAVS-AILNGNWKKRRISAKLAEKVTRIAEEQGYAIN
:. :.: . ::...:: :..: . ..: ..: . :.: :: .
P0ACN9 MKAKKQETAATMKDVALKAKVSTATVSRALMNPD----KVSQATRNRVEKAAREVGYLPQ
10 20 30 40 50
60 70 80 90 100 110
Unknow RQASMLRSKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAV
.. .. ..:..: .:.: . .:. : . .: : ..: : .: .. . : .
P0ACN9 PMGRNVKRNESRTILVIVPDICDPFFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFI
60 70 80 90 100 110
120 130 140 150 160 170
Unknow KAMLSWQVDWVVATGATNPDKISALCQQAGVPTV--NLDLPGSLSPSVISDNYGGAKALT
... :.: .. :. : : :. : : : : :.: :: .: .
P0ACN9 DLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELELPTVHIDNLTAAFDAV
120 130 140 150 160 170
180 190 200 210 220 230
Unknow HKILANSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKA
. . .. .: : .:
P0ACN9 NYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAM
180 190 200 210 220 230
>>P0ACP0|CYTR_SHIFL HTH-type transcriptional repressor c (341 aa)
s-w opt: 147 Z-score: 176.8 bits: 40.8 E(): 0.017
Smith-Waterman score: 147; 24.3% identity (54.1% similar) in 185 aa overlap (5-186:11-191)
10 20 30 40 50
Unknow MKKITIYDLAELSGVSASAVS-AILNGNWKKRRISAKLAEKVTRIAEEQGYAIN
:. :.: . ::...:: :..: . ..: ..: . :.: :: .
P0ACP0 MKAKKQETAATMKDVALKAKVSTATVSRALMNPD----KVSQATRNRVEKAAREVGYLPQ
10 20 30 40 50
60 70 80 90 100 110
Unknow RQASMLRSKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAV
.. .. ..:..: .:.: . .:. : . .: : ..: : .: .. . : .
P0ACP0 PMGRNVKRNESRTILVIVPDICDPFFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFI
60 70 80 90 100 110
120 130 140 150 160 170
Unknow KAMLSWQVDWVVATGATNPDKISALCQQAGVPTV--NLDLPGSLSPSVISDNYGGAKALT
... :.: .. :. : : :. : : : : :.: :: .: .
P0ACP0 DLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELELPTVHIDNLTAAFDAV
120 130 140 150 160 170
180 190 200 210 220 230
Unknow HKILANSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKA
. . .. .: : .:
P0ACP0 NYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAM
180 190 200 210 220 230
>>P23823|YAML_STRLM Uncharacterized HTH-type transcripti (351 aa)
s-w opt: 146 Z-score: 175.3 bits: 40.6 E(): 0.02
Smith-Waterman score: 146; 26.4% identity (53.7% similar) in 201 aa overlap (8-195:18-207)
10 20 30 40 50
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGY
:.: . :: ...: .::: : :.. ..: . ::
P23823 MTLPAPRDGSPAVPRLADIAAQAQVSEATASRVLNGR-PASRXSTR--QRVLAALDLLGY
10 20 30 40 50
60 70 80 90 100
Unknow AINRQASMLRSKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRP--EL
.. . :: ... .::.. :. : : ..:. :. : :.. ::. :
P23823 ---ERPTRLRRRSAGLIGLVTPELTNPIFPAFAQVVEQALAGYGYTPVL-CTQI-PGGAT
60 70 80 90 100 110
110 120 130 140 150 160
Unknow EIEAVKAMLSWQVDWVV------ATGATNPDKISALCQQAGVPTVNLDLPGSL--SPSVI
: : :. . :. .: : ...: . . : .. ::: : .. . .: :
P23823 EDELVEQLEERGVNGIVFLSGLHADTTADPRRYARLTER-GVPFVLINGYNERIRAPFVS
120 130 140 150 160 170
170 180 190 200 210
Unknow SDNYGGAK-ALTHKILANSARRRGELA--PLTFIGGRRATITPASVYAASTMRIASWGLA
:. .... :. : ::. ..:: :: : .. .::
P23823 PDDRSAVRMAVRH--LADLGHRRIGLAVGPDRYVPSRRKAEGFADALAEILGTPRDQAEQ
180 190 200 210 220
220 230 240 250 260 270
Unknow CRRRIFWLPAIRKATLRTACRSGLAARRRCCRGYLLTRRYPWKGLCAGCRRWV
P23823 HVRRTLFSVEGGHAAAGSLLEQGCTGLVCGSDLMALGAVRAARERGLDVPADLSVVGFDD
230 240 250 260 270 280
>>P21867|RAFR_ECOLX HTH-type transcriptional regulator r (336 aa)
s-w opt: 145 Z-score: 174.4 bits: 40.3 E(): 0.023
Smith-Waterman score: 145; 24.0% identity (58.1% similar) in 179 aa overlap (4-176:1-175)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
... .: :.:...:: :.: ..:. :.: :...:: : :: :.
P21867 MSLKAIATTLGISVTTVSRALGG---FSDVAASTRERVEAEARRRGYRPNTQARRLK
10 20 30 40 50
70 80 90 100 110
Unknow SKKSHVIGMIIPKYDNRY-FGSIAERFEEMARERGLLPI-ITCTRRRPELEIEA-VKAML
. :. .::.. :. : . : . . ..:: . : . . . .. .. .
P21867 TGKTDAIGLVYPENDVPFNSGVFMDMVSCISRELAYHDIDLLLIADDEHADCHSYMRLVE
60 70 80 90 100 110
120 130 140 150 160 170
Unknow SWQVDWVVATGATNPD-KISALCQQAGVPTVNLD-LPGSLSPSVIS-DNYGGAKALTHKI
: ..: .. . . . : .:. : ..::.: . : .: .: . .. ::..:. :.:.
P21867 SRRIDALIIAHTLDDDPRITHL-HKAGIPFLALGRVPQGLPCAWFDFDNHAGTWQATQKL
120 130 140 150 160 170
180 190 200 210 220 230
Unknow LANSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLR
.:
P21867 IALGHKSIALLSENTSHSYVIARRQGWLDALHEHGLKDPLLRLVSPTRRAGYLAVMELMS
180 190 200 210 220 230
>>Q3Z213|PURR_SHISS HTH-type transcriptional repressor p (341 aa)
s-w opt: 143 Z-score: 171.8 bits: 39.9 E(): 0.032
Smith-Waterman score: 143; 20.4% identity (53.2% similar) in 216 aa overlap (5-214:3-215)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:. ..::...:: ..: : : .. . . : .: :. . : :.
Q3Z213 MATIKDVAKRANVSTTTVSHVIN---KTRFVAEETRNAVWAAIKELHYSPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.... ::.. . . ::. : : :. ..: :. . : . .. : . .
Q3Z213 VNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQA-GVPTVNLDL---PGSLSPSVISDNYGGAKALTHKILA
:: ... . :. . :. .. .: : .: .... .::.. . :. . ..
Q3Z213 VDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIE
120 130 140 150 160 170
180 190 200 210 220 230
Unknow NSARRRGEL-APLTFIGGRRATITPASVYAASTMRIA-SWGLACRRRIFWLPAIRKATLR
. :. : . .:: : . ... . ... ::
Q3Z213 RGHREIGVIPGPLERNTGAGRLVGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILS
180 190 200 210 220 230
240 250 260 270
Unknow TACRSGLAARRRCCRGYLLTRRYPWKGLCAGCRRWV
Q3Z213 QPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKD
240 250 260 270 280 290
>>Q5PH15|PURR_SALPA HTH-type transcriptional repressor p (341 aa)
s-w opt: 143 Z-score: 171.8 bits: 39.9 E(): 0.032
Smith-Waterman score: 143; 21.9% identity (55.6% similar) in 187 aa overlap (5-187:3-185)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:. ..::...:: ..: : : .. . . : .: :. . : :.
Q5PH15 MATIKDVAKRANVSTTTVSHVIN---KTRFVAEETRNAVWTAIKELHYSPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.... ::.. . . ::. : : :. ..: :. . : . .. : . .
Q5PH15 VNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKI-SALCQQAGVPTVNLDL---PGSLSPSVISDNYGGAKALTHKILA
:: ... . :. . : : . .: : .: .... .::.. ..:. .. . :.
Q5PH15 VDGLLVMCSEYPEPLLSMLEEYRHIPMVVMDWGEAKADFTDTVIDNAFAGGY-MAGRYLV
120 130 140 150 160 170
180 190 200 210 220 230
Unknow NSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTA
. ..: . :
Q5PH15 ERGHRDIGVIPGPLERNTGAGRLAGFMKAMEEALINVPDNWIVQGDFEPESGYHAMQQIL
180 190 200 210 220 230
>>Q8Z6P1|PURR_SALTI HTH-type transcriptional repressor p (341 aa)
s-w opt: 142 Z-score: 170.5 bits: 39.6 E(): 0.038
Smith-Waterman score: 142; 21.9% identity (55.6% similar) in 187 aa overlap (5-187:3-185)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:. ..::...:: ..: : : .. . . : .: :. . : :.
Q8Z6P1 MATIKDVAKRANVSTTTVSHVIN---KTRFVAEETRNAVWAAIKELHYSPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.... ::.. . . ::. : : :. ..: :. . : . .. : . .
Q8Z6P1 VNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKI-SALCQQAGVPTVNLDL---PGSLSPSVISDNYGGAKALTHKILA
:: ... . :. . : : . .: : .: .... .::.. ..:. .. . :.
Q8Z6P1 VDGLLVMCSEYPEPLLSMLEEYRHIPMVVMDWGEAKADFTDTVIDNAFAGGY-MAGRYLV
120 130 140 150 160 170
180 190 200 210 220 230
Unknow NSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTA
. ..: . :
Q8Z6P1 ERGHRDIGVIPGPLERNTGAGRLAGFMKAMEEALINVPDNWIVQGDFEPESGYHAMQQIL
180 190 200 210 220 230
>>O68446|PURR_SALTY HTH-type transcriptional repressor p (341 aa)
s-w opt: 142 Z-score: 170.5 bits: 39.6 E(): 0.038
Smith-Waterman score: 142; 21.9% identity (55.6% similar) in 187 aa overlap (5-187:3-185)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:. ..::...:: ..: : : .. . . : .: :. . : :.
O68446 MATIKDVAKRANVSTTTVSHVIN---KTRFVAEETRNAVWAAIKELHYSPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.... ::.. . . ::. : : :. ..: :. . : . .. : . .
O68446 VNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKI-SALCQQAGVPTVNLDL---PGSLSPSVISDNYGGAKALTHKILA
:: ... . :. . : : . .: : .: .... .::.. ..:. .. . :.
O68446 VDGLLVMCSEYPEPLLSMLEEYRHIPMVVMDWGEAKADFTDTVIDNAFAGGY-MAGRYLV
120 130 140 150 160 170
180 190 200 210 220 230
Unknow NSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTA
. ..: . :
O68446 ERGHRDIGVIPGPLERNTGAGRLAGFMKAMEEALINVPDNWIVQGDFEPESGYHAMQQIL
180 190 200 210 220 230
>>Q57PK6|PURR_SALCH HTH-type transcriptional repressor p (341 aa)
s-w opt: 142 Z-score: 170.5 bits: 39.6 E(): 0.038
Smith-Waterman score: 142; 21.9% identity (55.6% similar) in 187 aa overlap (5-187:3-185)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:. ..::...:: ..: : : .. . . : .: :. . : :.
Q57PK6 MATIKDVAKRANVSTTTVSHVIN---KTRFVAEETRNAVWAAIKELHYSPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.... ::.. . . ::. : : :. ..: :. . : . .. : . .
Q57PK6 VNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKI-SALCQQAGVPTVNLDL---PGSLSPSVISDNYGGAKALTHKILA
:: ... . :. . : : . .: : .: .... .::.. ..:. .. . :.
Q57PK6 VDGLLVMCSEYPEPLLSMLEEYRHIPMVVMDWGEAKADFTDTVIDNAFAGGY-MAGRYLV
120 130 140 150 160 170
180 190 200 210 220 230
Unknow NSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTA
. ..: . :
Q57PK6 ERGHRDIGVIPGPLERNTGAGRLAGFMKAMEEALINVPDNWIVQGDFEPESGYHAMQQIL
180 190 200 210 220 230
>>P31766|GALR_HAEIN HTH-type transcriptional regulator g (332 aa)
s-w opt: 141 Z-score: 169.4 bits: 39.4 E(): 0.044
Smith-Waterman score: 141; 23.7% identity (55.2% similar) in 194 aa overlap (5-196:3-187)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:.:..::...:: .:: . . .: . : . . .: : .:. :
P31766 MSTIRDVAKLANVSVATVSRVLNHSLS---VSENTRLVVEQAIAQLAYQPNANAQALA
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
... .::... . .:. ... ...:. . .: .. : : ::....: .
P31766 VQNTDTIGVVVTDVTDAFFAILVKAVDKVAEAHQKTILIGIGYHHAEKEREAINTLLRKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VD-WVVATGATNPDKISA-LCQQAGVPTVNLDLPGSLSPSVISDNYGGAKALTHKILANS
. :: . : . :..: : :. .: . : : :: :. :. ..
P31766 CSSLVVHSKALSDDELSHYLNTVQGMVIINRVIKGYEHRCVSLDNQKGTYLATEMLI---
120 130 140 150 160 170
180 190 200 210 220 230
Unknow ARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACR
: :. ...::. .:
P31766 --RYGH-QHIAYIGSNHAIFDEVERRNGYLAALKDHNYPIIEQAITLNSPDFEGGEKAMI
180 190 200 210 220
>>A1ABJ9|PURR_ECOK1 HTH-type transcriptional repressor p (341 aa)
s-w opt: 141 Z-score: 169.2 bits: 39.4 E(): 0.045
Smith-Waterman score: 141; 21.7% identity (55.0% similar) in 189 aa overlap (5-188:3-188)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:. ..::...:: ..: : : .. . . : .: :. . : :.
A1ABJ9 MATIKDVAKRANVSTTTVSHVIN---KTRFVAEETRNAVWAAIKELHYSPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.... ::.. . . ::. : : :. ..: :. . : . .. : . .
A1ABJ9 VNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQA-GVPTVNLDL---PGSLSPSVISDNYGGAKALTHKILA
:: ... . :. . :. .. .: : .: .... .::.. . :. . ..
A1ABJ9 VDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIE
120 130 140 150 160 170
180 190 200 210 220 230
Unknow NSARRRGEL-APLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRT
. :. : . .::
A1ABJ9 RGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILS
180 190 200 210 220 230
>>Q0T4B4|PURR_SHIF8 HTH-type transcriptional repressor p (341 aa)
s-w opt: 141 Z-score: 169.2 bits: 39.4 E(): 0.045
Smith-Waterman score: 141; 21.7% identity (55.0% similar) in 189 aa overlap (5-188:3-188)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:. ..::...:: ..: : : .. . . : .: :. . : :.
Q0T4B4 MATIKDVAKRANVSTTTVSHVIN---KTRFVAEETRNAVWAAIKELHYSPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.... ::.. . . ::. : : :. ..: :. . : . .. : . .
Q0T4B4 VNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQA-GVPTVNLDL---PGSLSPSVISDNYGGAKALTHKILA
:: ... . :. . :. .. .: : .: .... .::.. . :. . ..
Q0T4B4 VDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIE
120 130 140 150 160 170
180 190 200 210 220 230
Unknow NSARRRGEL-APLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRT
. :. : . .::
Q0T4B4 RGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILS
180 190 200 210 220 230
>>Q32FB3|PURR_SHIDS HTH-type transcriptional repressor p (341 aa)
s-w opt: 141 Z-score: 169.2 bits: 39.4 E(): 0.045
Smith-Waterman score: 141; 21.7% identity (55.0% similar) in 189 aa overlap (5-188:3-188)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:. ..::...:: ..: : : .. . . : .: :. . : :.
Q32FB3 MATIKDVAKRANVSTTTVSHVIN---KTRFVAEETRNAVWAAIKELHYSPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.... ::.. . . ::. : : :. ..: :. . : . .. : . .
Q32FB3 VNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQA-GVPTVNLDL---PGSLSPSVISDNYGGAKALTHKILA
:: ... . :. . :. .. .: : .: .... .::.. . :. . ..
Q32FB3 VDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIE
120 130 140 150 160 170
180 190 200 210 220 230
Unknow NSARRRGEL-APLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRT
. :. : . .::
Q32FB3 RGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPKSWIVQGDFEPESGYRAMQQILS
180 190 200 210 220 230
>>Q321B7|PURR_SHIBS HTH-type transcriptional repressor p (341 aa)
s-w opt: 141 Z-score: 169.2 bits: 39.4 E(): 0.045
Smith-Waterman score: 141; 21.7% identity (55.0% similar) in 189 aa overlap (5-188:3-188)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:. ..::...:: ..: : : .. . . : .: :. . : :.
Q321B7 MATIKDVAKRANVSTTTVSHVIN---KTRFVAEETRNAVWAAIKELHYSPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.... ::.. . . ::. : : :. ..: :. . : . .. : . .
Q321B7 VNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQA-GVPTVNLDL---PGSLSPSVISDNYGGAKALTHKILA
:: ... . :. . :. .. .: : .: .... .::.. . :. . ..
Q321B7 VDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIE
120 130 140 150 160 170
180 190 200 210 220 230
Unknow NSARRRGEL-APLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRT
. :. : . .::
Q321B7 RGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILS
180 190 200 210 220 230
>>P0ACP9|PURR_SHIFL HTH-type transcriptional repressor p (341 aa)
s-w opt: 141 Z-score: 169.2 bits: 39.4 E(): 0.045
Smith-Waterman score: 141; 21.7% identity (55.0% similar) in 189 aa overlap (5-188:3-188)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:. ..::...:: ..: : : .. . . : .: :. . : :.
P0ACP9 MATIKDVAKRANVSTTTVSHVIN---KTRFVAEETRNAVWAAIKELHYSPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.... ::.. . . ::. : : :. ..: :. . : . .. : . .
P0ACP9 VNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQA-GVPTVNLDL---PGSLSPSVISDNYGGAKALTHKILA
:: ... . :. . :. .. .: : .: .... .::.. . :. . ..
P0ACP9 VDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIE
120 130 140 150 160 170
180 190 200 210 220 230
Unknow NSARRRGEL-APLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRT
. :. : . .::
P0ACP9 RGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILS
180 190 200 210 220 230
>>Q1RBD7|PURR_ECOUT HTH-type transcriptional repressor p (341 aa)
s-w opt: 141 Z-score: 169.2 bits: 39.4 E(): 0.045
Smith-Waterman score: 141; 21.7% identity (55.0% similar) in 189 aa overlap (5-188:3-188)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:. ..::...:: ..: : : .. . . : .: :. . : :.
Q1RBD7 MATIKDVAKRANVSTTTVSHVIN---KTRFVAEETRNAVWAAIKELHYSPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.... ::.. . . ::. : : :. ..: :. . : . .. : . .
Q1RBD7 VNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQA-GVPTVNLDL---PGSLSPSVISDNYGGAKALTHKILA
:: ... . :. . :. .. .: : .: .... .::.. . :. . ..
Q1RBD7 VDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIE
120 130 140 150 160 170
180 190 200 210 220 230
Unknow NSARRRGEL-APLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRT
. :. : . .::
Q1RBD7 RGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILS
180 190 200 210 220 230
>>P0ACP7|PURR_ECOLI HTH-type transcriptional repressor p (341 aa)
s-w opt: 141 Z-score: 169.2 bits: 39.4 E(): 0.045
Smith-Waterman score: 141; 21.7% identity (55.0% similar) in 189 aa overlap (5-188:3-188)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:. ..::...:: ..: : : .. . . : .: :. . : :.
P0ACP7 MATIKDVAKRANVSTTTVSHVIN---KTRFVAEETRNAVWAAIKELHYSPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.... ::.. . . ::. : : :. ..: :. . : . .. : . .
P0ACP7 VNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQA-GVPTVNLDL---PGSLSPSVISDNYGGAKALTHKILA
:: ... . :. . :. .. .: : .: .... .::.. . :. . ..
P0ACP7 VDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIE
120 130 140 150 160 170
180 190 200 210 220 230
Unknow NSARRRGEL-APLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRT
. :. : . .::
P0ACP7 RGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILS
180 190 200 210 220 230
>>Q8FH72|PURR_ECOL6 HTH-type transcriptional repressor p (341 aa)
s-w opt: 141 Z-score: 169.2 bits: 39.4 E(): 0.045
Smith-Waterman score: 141; 21.7% identity (55.0% similar) in 189 aa overlap (5-188:3-188)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:. ..::...:: ..: : : .. . . : .: :. . : :.
Q8FH72 MATIKDVAKRANVSTTTVSHVIN---KTRFVAEETRNAVWAAIKELHYSPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.... ::.. . . ::. : : :. ..: :. . : . .. : . .
Q8FH72 VNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQA-GVPTVNLDL---PGSLSPSVISDNYGGAKALTHKILA
:: ... . :. . :. .. .: : .: .... .::.. . :. . ..
Q8FH72 VDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIE
120 130 140 150 160 170
180 190 200 210 220 230
Unknow NSARRRGEL-APLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRT
. :. : . .::
Q8FH72 RGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPQSWIVQGDFEPESGYRAMQQILS
180 190 200 210 220 230
>>Q0THG9|PURR_ECOL5 HTH-type transcriptional repressor p (341 aa)
s-w opt: 141 Z-score: 169.2 bits: 39.4 E(): 0.045
Smith-Waterman score: 141; 21.7% identity (55.0% similar) in 189 aa overlap (5-188:3-188)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:. ..::...:: ..: : : .. . . : .: :. . : :.
Q0THG9 MATIKDVAKRANVSTTTVSHVIN---KTRFVAEETRNAVWAAIKELHYSPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.... ::.. . . ::. : : :. ..: :. . : . .. : . .
Q0THG9 VNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQA-GVPTVNLDL---PGSLSPSVISDNYGGAKALTHKILA
:: ... . :. . :. .. .: : .: .... .::.. . :. . ..
Q0THG9 VDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIE
120 130 140 150 160 170
180 190 200 210 220 230
Unknow NSARRRGEL-APLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRT
. :. : . .::
Q0THG9 RGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILS
180 190 200 210 220 230
>>P0ACP8|PURR_ECO57 HTH-type transcriptional repressor p (341 aa)
s-w opt: 141 Z-score: 169.2 bits: 39.4 E(): 0.045
Smith-Waterman score: 141; 21.7% identity (55.0% similar) in 189 aa overlap (5-188:3-188)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: :.:. ..::...:: ..: : : .. . . : .: :. . : :.
P0ACP8 MATIKDVAKRANVSTTTVSHVIN---KTRFVAEETRNAVWAAIKELHYSPSAVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.... ::.. . . ::. : : :. ..: :. . : . .. : . .
P0ACP8 VNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKR
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQA-GVPTVNLDL---PGSLSPSVISDNYGGAKALTHKILA
:: ... . :. . :. .. .: : .: .... .::.. . :. . ..
P0ACP8 VDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIE
120 130 140 150 160 170
180 190 200 210 220 230
Unknow NSARRRGEL-APLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRT
. :. : . .::
P0ACP8 RGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILS
180 190 200 210 220 230
>>Q9Z3R4|AGLR_RHIME HTH-type transcriptional regulator a (356 aa)
s-w opt: 141 Z-score: 168.9 bits: 39.4 E(): 0.047
Smith-Waterman score: 141; 28.7% identity (55.6% similar) in 171 aa overlap (4-165:3-167)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
... .:::: :.: ..:: ::: . ..:. .: . ..: :: :: :. :
Q9Z3R4 MPVNLKQLAELLGLSQTTVSRALNGYPE---VNAETRARVLEAVRETGYRPNRAAQRLA
10 20 30 40 50
70 80 90 100 110
Unknow SKKSHVIGMIIP---KYDNR-YFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAM
. :.. ::...: :. .:: . . : : :. . ... . :: : . . .
Q9Z3R4 TGKAYSIGLVMPIAAGIDSDIHFGEFLAGLAEEAVEHDFHFVLNPS--APEDEEATFRRL
60 70 80 90 100 110
120 130 140 150 160 170
Unknow L-SWQVDWV-VATGATNPDKISALCQQAGVPTV--NLDLPGSLS-PSVISDNYGGAKALT
: .:: : .: .: .: : . ..: : . .. : . : : :: :
Q9Z3R4 AASGNVDAVFIAYMRANDPRIEML-KALSIPFVVHGRSIGGPRDYPFVDVDNTGAFYDAA
120 130 140 150 160 170
180 190 200 210 220 230
Unknow HKILANSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKA
Q9Z3R4 RLLIQLGHNRIALINGPEHLTFSIRRRKGLVRALAEKGLNLDDALVHHSAMTDEHGYRSM
180 190 200 210 220 230
>>P36949|RBSB_BACSU D-ribose-binding protein precursor - (305 aa)
s-w opt: 140 Z-score: 168.8 bits: 39.2 E(): 0.047
Smith-Waterman score: 140; 25.9% identity (58.7% similar) in 143 aa overlap (61-197:34-174)
40 50 60 70 80 90
Unknow RRISAKLAEKVTRIAEEQGYAINRQASMLRSKKSHVIGMIIPKYDNRYFGSIAERFEEMA
.:: .::. . .: .: :. . .:. :
P36949 AVSVILTLSLFLLTACSLEPPQWAKPSNSGNKKEFTIGLSVSTLNNPFFVSLKKGIEKEA
10 20 30 40 50 60
100 110 120 130 140
Unknow RERGLLPIITCTRRRPELEIEAVKAMLSWQVDWVVATGATNPDKISALCQQA---GVPTV
..::. ::. .. . :. ... :: .. . :. . ::. ..: :::.:
P36949 KKRGMKVIIVDAQNDSSKQTSDVEDLIQQGVD-ALLINPTDSSAISTAVESANAVGVPVV
70 80 90 100 110 120
150 160 170 180 190 200
Unknow NLDLP---GSLSPSVISDNYGGAKALTHKILANSARRRGELAPLTFIGGRRATITPASVY
..: :.. : ::: :.. .. ..:.. . ...: : . : ::
P36949 TIDRSAEQGKVETLVASDNVKGGE-MAAAFIADKLGKGAKVAELEGVPGASATRERGSGF
130 140 150 160 170 180
210 220 230 240 250 260
Unknow AASTMRIASWGLACRRRIFWLPAIRKATLRTACRSGLAARRRCCRGYLLTRRYPWKGLCA
P36949 HNIADQKLQVVTKQSADFDRTKGLTVMENLLQGHPDIQAVFAHNDEMALGALEAINSSGK
190 200 210 220 230 240
>>P58258|REGA_CLOAB HTH-type transcriptional regulator r (334 aa)
s-w opt: 137 Z-score: 164.3 bits: 38.4 E(): 0.084
Smith-Waterman score: 137; 23.4% identity (55.1% similar) in 167 aa overlap (5-167:4-167)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
.: :.:. . :: ..:: .::. .. . .:: . .. : : : :.
P58258 MAASIKDVAREARVSIATVSRVLNN---VDVVNEETKKKVMEAIKKLDYRPNIVARSLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
......::..:: ..... :.. :... . :. : : . .... .
P58258 TQRTRTIGIVIPDISSQFYPEIVRGAEDVSNIYNYNVILCNTDLDISKEKDYIRVLKEKM
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLS----PSVISDNYGGAKALTHKILA
:: :. . . .: : .. .::: .. : . ::: :: .:
P58258 VDGVIYMSNSLAPEILQLLRDLKIPTVLVETRESEDENAFPSVTIDNAKAAYDAVNYLIK
120 130 140 150 160 170
180 190 200 210 220 230
Unknow NSARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTA
P58258 KGNNKIAYVGVNPKLKNNARAIIYEGYKKALLDNNIPLNENLIQFGGLKAIDGTDGINVI
180 190 200 210 220 230
>>O07567|NTDR_BACSU NTD biosynthesis operon regulator nt (329 aa)
s-w opt: 134 Z-score: 160.6 bits: 37.7 E(): 0.14
Smith-Waterman score: 134; 22.1% identity (55.9% similar) in 145 aa overlap (5-148:3-144)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
:: ..:.: .:: ..:: .::.. .: . . . . .: :. : : .:
O07567 MPTIDEIAKLCNVSKTTVSRVLNNH---PYVSKEKRDMILKAINELDYTPNYLARNFR
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
.:...:.. .:. :. .:... . . . .. :. : . :.: .. . .
O07567 RNKTQTIALSVPSIDHPFFAQLIKGVSHEVLFKNYKVIVFQTFYDKQTELELLELLKHKE
60 70 80 90 100 110
130 140 150 160 170
Unknow VDWVVATGATNP-DKISALCQQAGVPTVNLDLPGSLSPSVISDNYGGAKALTHKILANSA
:: .. : :.:: . . . . :
O07567 VDGIILGTLENEWDQISPFLKYGPILLCNEYHHSADITIIGYDEFEAAYMGVVHLIERGH
120 130 140 150 160 170
>>O05103|MALR_CLOBU HTH-type transcriptional regulator m (335 aa)
s-w opt: 134 Z-score: 160.5 bits: 37.7 E(): 0.14
Smith-Waterman score: 134; 29.2% identity (68.8% similar) in 96 aa overlap (4-99:1-93)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
..: :.:.::::..:.:: ..: : . :.. ::: .: ....: : .: .:.
O05103 MNIKDIARLSGVGVSTVSRVIN-NHPDVKQSTR--EKVLQIIKDSNYIPNNSARILK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
..... ::... : .:. ... . .. .: : :.
O05103 QNNTKNIGVLVKGVFNPFFSEMTNIIGNIIEENGYTMILQQNDFNLYQDVETMIGFVKEK
60 70 80 90 100 110
130 140 150 160 170 180
Unknow VDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLSPSVISDNYGGAKALTHKILANSAR
O05103 RLQGVICLGGNFTEIQEDSFEDIKVPVVLTSVNTISKKGKKYYSSVGIDNSKSAYKAVRY
120 130 140 150 160 170
>>P24508|SCRR_VIBAL Sucrose operon repressor - Vibrio al (94 aa)
s-w opt: 105 Z-score: 133.8 bits: 31.0 E(): 4.2
Smith-Waterman score: 105; 31.7% identity (69.8% similar) in 63 aa overlap (5-67:3-62)
10 20 30 40 50 60
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLR
...:.:.:.::: :.:: ..: .. .. . . :: . . : ::. :. :. :.
P24508 MASLHDVARLAGVSKSTVSRVINDEYGVKEATKQ---KVRQAVAECGYVPNQVAKDLK
10 20 30 40 50
70 80 90 100 110 120
Unknow SKKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQ
..: .:
P24508 EESSAIIVQDKTGKVLFVKEGALEQDEIAKVIELIKQNI
60 70 80 90
>>P0A2C6|RBSB_SALTI D-ribose-binding periplasmic protein (296 aa)
s-w opt: 111 Z-score: 132.2 bits: 32.3 E(): 5.2
Smith-Waterman score: 111; 22.2% identity (52.1% similar) in 167 aa overlap (36-196:5-162)
10 20 30 40 50 60
Unknow IYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLRSKKSH
::: :. .: . : .:.
P0A2C6 MNMKKLATLVSAVALSATVSANAMAK-------D
10 20
70 80 90 100 110 120
Unknow VIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQVDWVV
.:...: .: .: :. . .. : . : .. .. : :. :. :. . ..
P0A2C6 TIALVISTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQD-LTVRGTKIL
30 40 50 60 70 80
130 140 150 160 170
Unknow ATGATNPDKISA---LCQQAGVPTVNLD---LPGSLSPSVISDNYGGAKALTHKILANSA
. :. : .. . .:: .:...:: :.. . ::: :.: .. .:..:
P0A2C6 LINPTDSDAVGNAVKMANQAKIPVITLDRQATKGDVVSHIASDNVLGGK-IAGDYIAKKA
90 100 110 120 130 140
180 190 200 210 220 230
Unknow RRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACRS
. ... : :.: :
P0A2C6 GEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRTKGLNVMQNLLTAH
150 160 170 180 190 200
>>P0A2C5|RBSB_SALTY D-ribose-binding periplasmic protein (296 aa)
s-w opt: 111 Z-score: 132.2 bits: 32.3 E(): 5.2
Smith-Waterman score: 111; 22.2% identity (52.1% similar) in 167 aa overlap (36-196:5-162)
10 20 30 40 50 60
Unknow IYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLRSKKSH
::: :. .: . : .:.
P0A2C5 MNMKKLATLVSAVALSATVSANAMAK-------D
10 20
70 80 90 100 110 120
Unknow VIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQVDWVV
.:...: .: .: :. . .. : . : .. .. : :. :. :. . ..
P0A2C5 TIALVISTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQD-LTVRGTKIL
30 40 50 60 70 80
130 140 150 160 170
Unknow ATGATNPDKISA---LCQQAGVPTVNLD---LPGSLSPSVISDNYGGAKALTHKILANSA
. :. : .. . .:: .:...:: :.. . ::: :.: .. .:..:
P0A2C5 LINPTDSDAVGNAVKMANQAKIPVITLDRQATKGDVVSHIASDNVLGGK-IAGDYIAKKA
90 100 110 120 130 140
180 190 200 210 220 230
Unknow RRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACRS
. ... : :.: :
P0A2C5 GEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRTKGLNVMQNLLTAH
150 160 170 180 190 200
>>P02925|RBSB_ECOLI D-ribose-binding periplasmic protein (296 aa)
s-w opt: 111 Z-score: 132.2 bits: 32.3 E(): 5.2
Smith-Waterman score: 111; 21.6% identity (52.1% similar) in 167 aa overlap (36-196:5-162)
10 20 30 40 50 60
Unknow IYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLRSKKSH
::: :. .: . : .:.
P02925 MNMKKLATLVSAVALSATVSANAMAK-------D
10 20
70 80 90 100 110 120
Unknow VIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQVDWVV
.:.... .: .: :. . .. : . : .. .. : :. :. :. . ..
P02925 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQD-LTVRGTKIL
30 40 50 60 70 80
130 140 150 160 170
Unknow ATGATNPDKISA---LCQQAGVPTVNLD---LPGSLSPSVISDNYGGAKALTHKILANSA
. :. : .. . .::..:...:: : . . ::: :.: .. .:..:
P02925 LINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGK-IAGDYIAKKA
90 100 110 120 130 140
180 190 200 210 220 230
Unknow RRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACRS
. ... : :.: :
P02925 GEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAH
150 160 170 180 190 200
>>Q53217|Y4VI_RHISN Uncharacterized short-chain type deh (548 aa)
s-w opt: 113 Z-score: 129.9 bits: 32.8 E(): 7
Smith-Waterman score: 113; 26.3% identity (54.3% similar) in 186 aa overlap (33-213:293-463)
10 20 30 40 50 60
Unknow KITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEK--VTRIAEEQGYAINRQASMLR
:. ..::. .. ::. .: . :..:
Q53217 TPGAEFMRPVEDTDARTVIVMGGATGVGAAIARRFAENGDTVVIADGDGEEAVKLAGLLG
270 280 290 300 310 320
70 80 90 100 110
Unknow SKK-SHVIGMIIPKYDNRYFGSIAERFEEM-ARERGLLPI-ITCTRRRPELEIEAVKAML
.:. :. . . : . ::: .. . :. : . :.. ::. .: .:
Q53217 DKHLSRRVDRTVETEVVSLFEELRERFGHLDVFVNGMNEILVPNTEESPEV----LKRIL
330 340 350 360 370
120 130 140 150 160 170
Unknow SWQVDWVVATGATNPDKISALCQQAGVPTVNLDLPGSLSPSVISDNYGGAKALTHKILAN
. : ::: . . .:. ...: .:: :::: . : ::. .: .
Q53217 D-----VNLTGAFTCVREAAISMRSGSVILNLGASLSLSPLAPSHAYGAYNAGIDMLTRC
380 390 400 410 420 430
180 190 200 210 220 230
Unknow SARRRGELAPLTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTAC
.: .::.:: : : ::..:. . . .. :.:.
Q53217 TA---AELGPL---GIRTATVAPGYIRTCAANRLAAVAGMDSASLRQRIPLGRVGDAEEV
440 450 460 470 480
240 250 260 270
Unknow RSGLAARRRCCRGYLLTRRYPWKGLCAGCRRWV
Q53217 AEAAYFLASFDASYINGSILHVDGGLISSREAGWGSEVDGAISAEMRPQRRPAARWRLLS
490 500 510 520 530 540
>>Q63ZT8|FTHFD_XENTR 10-formyltetrahydrofolate dehydroge (902 aa)
s-w opt: 116 Z-score: 129.7 bits: 33.5 E(): 7.1
Smith-Waterman score: 116; 24.5% identity (53.9% similar) in 241 aa overlap (3-198:452-681)
10 20 30
Unknow MKKITIYDLAELSGVSASAVSAILNGNWKKR-
:... ...... . :.: :. ::.: :
Q63ZT8 HQLFINGQFIDAEGGKTYDTVNPTDGTAICKVSLAQVSDIDRAVAAAKEAFENGEWGKMN
430 440 450 460 470 480
40 50 60 70 80
Unknow -----RISAKLAEKVTRIAEEQGY--AINRQASMLRSKKSHVIGMIIPKYDNRYFGSIAE
:: .::. . . :: . .:. : . . :.:: :: : . :::.. .
Q63ZT8 PRDRGRILYRLADIMEEHQEELATIESIDSGAVYTLALKTHV-GMSIQTF--RYFAGWCD
490 500 510 520 530
90 100 110 120 130
Unknow RFE------EMAR-ERGLLPIITCTRRRPELEIEAVKA-------MLSWQVDWVVATGAT
... ..:: .:.: : :::.: . . .. ::.:.. .:.: :
Q63ZT8 KIQGSTIPINQARPNRNL----TFTRREP-IGVCGIVIPWNYPLMMLAWKTAACLAAGNT
540 550 560 570 580 590
140 150 160
Unknow ---NPDKISALCQ--------QAGVP--TVNLDLPGSLS---------PSVISDNYGGAK
.: ... : .::.: ..:. :::. : :.: . .. :.
Q63ZT8 VVLKPAQVTPLTALKFAELSVKAGIPKGVINI-LPGAGSLIGQRLSDHPDVRKIGFTGST
600 610 620 630 640 650
170 180 190 200 210 220
Unknow ALTHKILANSARRRGELAPLTF-IGGRRATITPASVYAASTMRIASWGLACRRRIFWLPA
. ..:. . : :.. ... .::. :
Q63ZT8 PIGKHIMKSCAV--GNVKKVSLELGGKSPLIIFQDCDLDKAVRMGMSSVFFNKGENCIAA
660 670 680 690 700 710
230 240 250 260 270
Unknow IRKATLRTACRSGLAARRRCCRGYLLTRRYPWKGLCAGCRRWV
Q63ZT8 GRLFLEESIHDEFVKRVVGEVKKMKIGDPLDRSTDHGPQNHKAHLDKLIEYCQTGVKEGA
720 730 740 750 760 770
>>Q037J6|KPTA_LACC3 Probable RNA 2'-phosphotransferase - (188 aa)
s-w opt: 106 Z-score: 129.5 bits: 31.2 E(): 7.3
Smith-Waterman score: 106; 25.0% identity (52.8% similar) in 144 aa overlap (52-181:9-151)
30 40 50 60 70 80
Unknow AILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLRSKKSHVIGMIIPKYDNRYFGS
:.. ::: .. . .:... .: . .
Q037J6 MMDKRLVKISKTLSMLLRHHPEKLGLVLDQYGRTDWKT
10 20 30
90 100 110 120 130
Unknow IAERFE---EMARERGLLPIITC--TRRRPELEIEAVKAMLSWQVDWVVATGATNPDK--
...::. .: .: .: : :..: :: ...:. . .: . : ::.: .
Q037J6 LVRRFNAHYQMHLDRQVLQAIMAQSTKKRFALEGTTIRAVYGHSVPVMPLTPATEPPQWL
40 50 60 70 80 90
140 150 160 170 180
Unknow ISALCQQA-------GVPTVNLDLPGSLSPSVISDNYGGAKALTHKILANSARRRGELAP
. .:: :. .: :. :: .: . ::. :: .. : :
Q037J6 YHGTSHQAATVIAKEGLLPMNRDFV-HLSEDVATARQVGARHDTHPVIYRIAARDAAKNG
100 110 120 130 140 150
190 200 210 220 230 240
Unknow LTFIGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACRSGLAARRRC
Q037J6 ILFYPTSSRVWLVSELPARFLHHLTSYFRRP
160 170 180
>>P56674|HH_DROHY Protein hedgehog precursor [Contains: (422 aa)
s-w opt: 111 Z-score: 129.4 bits: 32.3 E(): 7.4
Smith-Waterman score: 111; 42.2% identity (62.5% similar) in 64 aa overlap (178-236:322-383)
150 160 170 180 190 200
Unknow NLDLPGSLSPSVISDNYGGAKALTHKILANSARRRGELAPLTFIGGRRATITPASVYAA-
:.. :: .:::: : .. . :: ::.
P56674 IFADRVEELDYVLVRDATGELQPQRVLRLGSVQSRGVVAPLTREGTIVVNSVAASCYAVI
300 310 320 330 340 350
210 220 230 240 250 260
Unknow STMRIASWGLACRRRIF----WLPAIRKATLRTACRSGLAARRRCCRGYLLTRRYPWKGL
:.. .: :::: : . :.:: :. ::::
P56674 SSQSLAHWGLAPMRLLSTLQSWMPA--KGQLRTAQDKSTPKDATAQQQNGLHWYANALYK
360 370 380 390 400
270
Unknow CAGCRRWV
P56674 VKDYVLPKSWRHD
410 420
>>Q9KNV2|AROB_VIBCH 3-dehydroquinate synthase - Vibrio c (361 aa)
s-w opt: 110 Z-score: 129.4 bits: 32.1 E(): 7.4
Smith-Waterman score: 110; 22.8% identity (50.0% similar) in 228 aa overlap (32-249:3-223)
10 20 30 40 50 60
Unknow KKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLRS
::...:.:. :. : : : . :
Q9KNV2 MERITVNLGERSYPISIGAGLFAN-PALLSLS
10 20 30
70 80 90 100 110
Unknow KKSHVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAML---S
:..:. . : .: ..... ...:: . . . ...: ..: .
Q9KNV2 AKQKVVIVTNHTVAPLYAPAIISLLDHIGCQHALLELPDGEQYKTLETFNTVMSFLLEHN
40 50 60 70 80 90
120 130 140 150 160 170
Unknow WQVDWVVAT--GATNPDKI--SALCQQAGVPTVNLDLPGSLSPSVISDNYGGAKALTHKI
.. : :: . :.. : . .: : : :: ... : .: : .... :: :..: .
Q9KNV2 YSRDVVVIALGGGVIGDLVGFAAACYQRGVDFIQI--PTTLL-SQVDSSVGGKTAVNHPL
100 110 120 130 140
180 190 200 210 220 230
Unknow LANSARRRGEL-APLTFIGGRRATIT-PASVYAASTMRIASWGLACRRRIF-WLPAIRKA
: : . : . . : :: .::. .. ..:. .: :: : .:
Q9KNV2 GKNMI---GAFYQPKAVVIDTDCLTTLPAREFAAGMAEVIKYGIIYDSAFFDWLEAQMEA
150 160 170 180 190 200
240 250 260 270
Unknow TLRTACRSGLAARRRCCRGYLLTRRYPWKGLCAGCRRWV
.. : :::.
Q9KNV2 LYALDEQALTYAIARCCQIKAEVVAQDEKESGIRALLNLGHTFGHAIEAHMGYGNWLHGE
210 220 230 240 250 260
>>P96711|ARAR_BACSU Arabinose metabolism transcriptional (362 aa)
s-w opt: 109 Z-score: 128.1 bits: 31.9 E(): 8.8
Smith-Waterman score: 109; 25.0% identity (56.1% similar) in 132 aa overlap (50-172:66-195)
20 30 40 50 60 70
Unknow VSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQA-SMLRSKKSHVIGMIIPKYDNRY
.. .:.: : :.:.:. ::.. ..
P96711 QFGVSRHTIRKAIGDLVSQGLLYSVQGGGTFVASRSAKSALHSNKT--IGVLTTYISDYI
40 50 60 70 80 90
80 90 100 110 120 130
Unknow FGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLSWQVDWVVA----TGATNPDK
: :: . .: . :.: ..: : :. : .... .:: ..: ... .. .:.
P96711 FPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNI
100 110 120 130 140 150
140 150 160 170 180 190
Unknow ISALC-QQAGVP--TVNLDLPGSLSPS-VISDNYGGAKALTHKILANSARRRGELAPLTF
: .. :.: .: . .:: ...: :: : :
P96711 GYYLNLEKNGIPFAMINASYAELAAPSFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDT
160 170 180 190 200 210
200 210 220 230 240 250
Unknow IGGRRATITPASVYAASTMRIASWGLACRRRIFWLPAIRKATLRTACRSGLAARRRCCRG
P96711 QGVKRMNGFIQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAILCYN
220 230 240 250 260 270
270 residues in 1 query sequences
125286976 residues in 349480 library sequences
Scomplib [35.03]
start: Mon Jun 15 20:57:04 2009 done: Mon Jun 15 21:01:35 2009
Total Scan time: 267.580 Total Display time: 0.140
Function used was SSEARCH [version 35.03 Feb. 18, 2008]gbiowstest-ssearch.py
#!/usr/bin/env python
# ================================================================================
#
# COPYRIGHT NOTICE
#
# Centre National de la Recherche Scientifique
# CNRS
#
# Institut de Biologie et Chimie des Proteines
# IBCP CNRS UMR 5086
# 7 passage du Vercors
# 69007 Lyon, FRANCE
#
# This software/database is covered by copyright of CNRS IBCP
# All rights reserved. Reproduction and usage of this software/database are
# strictly restricted, and need a prior written permission from CNRS IBCP
# (see "Contact" below).
#
# CNRS IBCP do not and cannot warrant the performance or results that
# may be obtained by using this software or data. CNRS IBCP disclaim all
# warranties, express or implied, including warranties of performance,
# merchantability or fitness for any particular purpose.
#
# ================================================================================
#
# Author: Christophe Blanchet
#
# Contact: Christophe.Blanchet@ibcp.fr
#
# First Version Creation Date: 18/11/2008
#
# $Revision: 1.0 $
#
# File Description:
#
#
# Modifications:
# --------------------------------------------------------------------------
# Date Name Description of modification
# ------- ---------- -----------------------------------------------------
#
# ================================================================================
import sys
import time
from SSearch_Service_client import *
fn_input = 'benchy_seq001.seq'
fn_control = 'control-seq001.SSearch'
ret = 0
# get a port proxy instance
loc = SSearch_ServiceLocator()
port = loc.getSSearchPort()
###
# submit a new request
# create
req = submitSSearchRequest()
fp_input = open (fn_input, 'r')
req._Sequence = fp_input.read()
req._SeqDatabase = "swiss-prot"
# call the remote method
resp = port.submitSSearch(req)
jobid = resp._JobId
#print jobid
if not jobid:
ret = 1
###
# check status
# while status different of 'done' or 'aborted', check again
status = 'init'
req = checkStatusSSearchRequest()
req._JobId = jobid
while status not in ('done','aborted'):
time.sleep(2)
resp = port.checkStatusSSearch(req)
status = resp._Status
#print status
if status != 'done':
ret = 1
###
# get results
req = getResultsSSearchRequest()
req._JobId = jobid
resp = port.getResultsSSearch(req)
# write result
open(fn_control,'w').write(resp._SeqSimilar)
# check result
if 'RBTR_KLEAE' not in resp._SeqSimilar:
ret = 1
# print "wooohh"
#print ret
sys.exit (ret)
SSearch_Service_client.py
##################################################
# file: SSearch_Service_client.py
#
# client stubs generated by "ZSI.generate.wsdl2python.WriteServiceModule"
# /usr/local/bin/wsdl2py http://gbio-pbil.ibcp.fr/ws/SSearchWS.wsdl
#
##################################################
import urlparse, types
from ZSI.TCcompound import ComplexType, Struct
from ZSI import client
from ZSI.schema import GED, GTD
import ZSI
# Locator
class SSearch_ServiceLocator:
SSearchPort_address = "http://gbio.ibcp.fr:8090/SSearch_Service"
def getSSearchPortAddress(self):
return SSearch_ServiceLocator.SSearchPort_address
def getSSearchPort(self, url=None, **kw):
return SSearchBindingSOAP(url or SSearch_ServiceLocator.SSearchPort_address, **kw)
# Methods
class SSearchBindingSOAP:
def __init__(self, url, **kw):
kw.setdefault("readerclass", None)
kw.setdefault("writerclass", None)
# no resource properties
self.binding = client.Binding(url=url, **kw)
# no ws-addressing
# op: submitSSearch
def submitSSearch(self, request, **kw):
if isinstance(request, submitSSearchRequest) is False:
raise TypeError, "%s incorrect request type" % (request.__class__)
# no input wsaction
self.binding.Send(None, None, request, soapaction="urn:SSearchWS.wsdl#submitSSearch", encodingStyle="http://schemas.xmlsoap.org/soap/encoding/", **kw)
# no output wsaction
typecode = Struct(pname=None, ofwhat=submitSSearchResponse.typecode.ofwhat, pyclass=submitSSearchResponse.typecode.pyclass)
response = self.binding.Receive(typecode)
return response
# op: checkStatusSSearch
def checkStatusSSearch(self, request, **kw):
if isinstance(request, checkStatusSSearchRequest) is False:
raise TypeError, "%s incorrect request type" % (request.__class__)
# no input wsaction
self.binding.Send(None, None, request, soapaction="urn:SSearchWS.wsdl#checkStatusSSearch", encodingStyle="http://schemas.xmlsoap.org/soap/encoding/", **kw)
# no output wsaction
typecode = Struct(pname=None, ofwhat=checkStatusSSearchResponse.typecode.ofwhat, pyclass=checkStatusSSearchResponse.typecode.pyclass)
response = self.binding.Receive(typecode)
return response
# op: getResultsSSearch
def getResultsSSearch(self, request, **kw):
if isinstance(request, getResultsSSearchRequest) is False:
raise TypeError, "%s incorrect request type" % (request.__class__)
# no input wsaction
self.binding.Send(None, None, request, soapaction="urn:SSearchWS.wsdl#getResultsSSearch", encodingStyle="http://schemas.xmlsoap.org/soap/encoding/", **kw)
# no output wsaction
typecode = Struct(pname=None, ofwhat=getResultsSSearchResponse.typecode.ofwhat, pyclass=getResultsSSearchResponse.typecode.pyclass)
response = self.binding.Receive(typecode)
return response
# op: cancelSSearch
def cancelSSearch(self, request, **kw):
if isinstance(request, cancelSSearchRequest) is False:
raise TypeError, "%s incorrect request type" % (request.__class__)
# no input wsaction
self.binding.Send(None, None, request, soapaction="urn:SSearchWS.wsdl#cancelSSearch", encodingStyle="http://schemas.xmlsoap.org/soap/encoding/", **kw)
# no output wsaction
typecode = Struct(pname=None, ofwhat=cancelSSearchResponse.typecode.ofwhat, pyclass=cancelSSearchResponse.typecode.pyclass)
response = self.binding.Receive(typecode)
return response
class submitSSearchRequest:
def __init__(self, **kw):
"""Keyword parameters:
Sequence -- part Sequence
SeqDatabase -- part SeqDatabase
"""
self._Sequence = kw.get("Sequence")
self._SeqDatabase = kw.get("SeqDatabase")
submitSSearchRequest.typecode = Struct(pname=("urn:SSearch_Service","submitSSearch"), ofwhat=[ZSI.TC.String(pname="Sequence", aname="_Sequence", typed=False, encoded=None, minOccurs=1, maxOccurs=1, nillable=True), ZSI.TC.String(pname="SeqDatabase", aname="_SeqDatabase", typed=False, encoded=None, minOccurs=1, maxOccurs=1, nillable=True)], pyclass=submitSSearchRequest, encoded="urn:SSearch_Service")
class submitSSearchResponse:
def __init__(self, **kw):
"""Keyword parameters:
JobId -- part JobId
"""
self._JobId = kw.get("JobId")
submitSSearchResponse.typecode = Struct(pname=("urn:SSearch_Service","submitSSearchResponse"), ofwhat=[ZSI.TC.String(pname="JobId", aname="_JobId", typed=False, encoded=None, minOccurs=1, maxOccurs=1, nillable=True)], pyclass=submitSSearchResponse, encoded="urn:SSearch_Service")
class checkStatusSSearchRequest:
def __init__(self, **kw):
"""Keyword parameters:
JobId -- part JobId
"""
self._JobId = kw.get("JobId")
checkStatusSSearchRequest.typecode = Struct(pname=("urn:SSearch_Service","checkStatusSSearch"), ofwhat=[ZSI.TC.String(pname="JobId", aname="_JobId", typed=False, encoded=None, minOccurs=1, maxOccurs=1, nillable=True)], pyclass=checkStatusSSearchRequest, encoded="urn:SSearch_Service")
class checkStatusSSearchResponse:
def __init__(self, **kw):
"""Keyword parameters:
Status -- part Status
"""
self._Status = kw.get("Status")
checkStatusSSearchResponse.typecode = Struct(pname=("urn:SSearch_Service","checkStatusSSearchResponse"), ofwhat=[ZSI.TC.String(pname="Status", aname="_Status", typed=False, encoded=None, minOccurs=1, maxOccurs=1, nillable=True)], pyclass=checkStatusSSearchResponse, encoded="urn:SSearch_Service")
class getResultsSSearchRequest:
def __init__(self, **kw):
"""Keyword parameters:
JobId -- part JobId
"""
self._JobId = kw.get("JobId")
getResultsSSearchRequest.typecode = Struct(pname=("urn:SSearch_Service","getResultsSSearch"), ofwhat=[ZSI.TC.String(pname="JobId", aname="_JobId", typed=False, encoded=None, minOccurs=1, maxOccurs=1, nillable=True)], pyclass=getResultsSSearchRequest, encoded="urn:SSearch_Service")
class getResultsSSearchResponse:
def __init__(self, **kw):
"""Keyword parameters:
SeqSimilar -- part SeqSimilar
Logout -- part Logout
"""
self._SeqSimilar = kw.get("SeqSimilar")
self._Logout = kw.get("Logout")
getResultsSSearchResponse.typecode = Struct(pname=("urn:SSearch_Service","getResultsSSearchResponse"), ofwhat=[ZSI.TC.String(pname="SeqSimilar", aname="_SeqSimilar", typed=False, encoded=None, minOccurs=1, maxOccurs=1, nillable=True), ZSI.TC.String(pname="Logout", aname="_Logout", typed=False, encoded=None, minOccurs=1, maxOccurs=1, nillable=True)], pyclass=getResultsSSearchResponse, encoded="urn:SSearch_Service")
class cancelSSearchRequest:
def __init__(self, **kw):
"""Keyword parameters:
JobId -- part JobId
"""
self._JobId = kw.get("JobId")
cancelSSearchRequest.typecode = Struct(pname=("urn:SSearch_Service","cancelSSearch"), ofwhat=[ZSI.TC.String(pname="JobId", aname="_JobId", typed=False, encoded=None, minOccurs=1, maxOccurs=1, nillable=True)], pyclass=cancelSSearchRequest, encoded="urn:SSearch_Service")
class cancelSSearchResponse:
def __init__(self, **kw):
"""Keyword parameters:
Status -- part Status
"""
self._Status = kw.get("Status")
cancelSSearchResponse.typecode = Struct(pname=("urn:SSearch_Service","cancelSSearchResponse"), ofwhat=[ZSI.TC.String(pname="Status", aname="_Status", typed=False, encoded=None, minOccurs=1, maxOccurs=1, nillable=True)], pyclass=cancelSSearchResponse, encoded="urn:SSearch_Service")
SSearch_Service_client.pyc (binary file)
SSearch_Service_types.py
################################################## # file: SSearch_Service_types.py # # schema types generated by "ZSI.generate.wsdl2python.WriteServiceModule" # /usr/local/bin/wsdl2py http://gbio-pbil.ibcp.fr/ws/SSearchWS.wsdl # ################################################## import ZSI import ZSI.TCcompound from ZSI.schema import LocalElementDeclaration, ElementDeclaration, TypeDefinition, GTD, GED
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