test1
This is a test of the EMBOSS ssematch service.
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Support reference#1834-1835
derived from EMBOSS QA tests
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view log 3 weeks agoPASSED
Test began: 2012-04-27 06:35:52 Test ended: 2012-04-27 06:35:53 Result : Test passed ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Preparing caller object for runAndWaitFor operation Calling the service and getting the response Soaplab report received: ---------------------------- Summary: Completed: Successfully Termination status: 0 Started: 2012-Apr-27 06:57:34 (BST) Ended: 2012-Apr-27 06:57:35 (BST) Duration: 0:00:00.791 Report: Name: utils_database_creation.ssematch Job ID: [utils_database_creation.ssematch]_46702c9c.13653c3e6b1._694b Program and parameters: /nfs/public/ro/es/appbin/linux-x86_64/EMBOSS-6.3.1/bin/ssematch -ssinfile i_ssinfile -dcfinfile i_dcfinfile -datafile SSSUB -maxhits 2 -outssfile o_outssfile -outsefile o_outsefile -logfile ssematch.log -auto --- end of parameters Exit code: 0 PassedDownload this log...
view log 4 weeks agoPASSED
Test began: 2012-04-21 05:16:26 Test ended: 2012-04-21 05:16:28 Result : Test passed ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Preparing caller object for runAndWaitFor operation Calling the service and getting the response Soaplab report received: ---------------------------- Summary: Completed: Successfully Termination status: 0 Started: 2012-Apr-21 05:37:46 (BST) Ended: 2012-Apr-21 05:37:47 (BST) Duration: 0:00:00.699 Report: Name: utils_database_creation.ssematch Job ID: [utils_database_creation.ssematch]_46702c9c.13653c3e6b1._6e15 Program and parameters: /nfs/public/ro/es/appbin/linux-x86_64/EMBOSS-6.3.1/bin/ssematch -ssinfile i_ssinfile -dcfinfile i_dcfinfile -datafile SSSUB -maxhits 2 -outssfile o_outssfile -outsefile o_outsefile -logfile ssematch.log -auto --- end of parameters Exit code: 0 PassedDownload this log...
view log 2 months agoPASSED
Test began: 2012-04-02 18:46:32 Test ended: 2012-04-02 18:46:34 Result : Test passed ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Preparing caller object for runAndWaitFor operation Calling the service and getting the response Soaplab report received: ---------------------------- Summary: Completed: Successfully Termination status: 0 Started: 2012-Apr-02 19:06:43 (BST) Ended: 2012-Apr-02 19:06:43 (BST) Duration: 0:00:00.710 Report: Name: utils_database_creation.ssematch Job ID: [utils_database_creation.ssematch]381b1d3f.13653b0e874._7949 Program and parameters: /nfs/public/ro/es/appbin/linux-x86_64/EMBOSS-6.3.1/bin/ssematch -ssinfile i_ssinfile -dcfinfile i_dcfinfile -datafile SSSUB -maxhits 2 -outssfile o_outssfile -outsefile o_outsefile -logfile ssematch.log -auto --- end of parameters Exit code: 0 PassedDownload this log...
view log 2 months agoPASSED
Test began: 2012-04-01 22:41:40 Test ended: 2012-04-01 22:41:42 Result : Test passed ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Preparing caller object for runAndWaitFor operation Calling the service and getting the response Soaplab report received: ---------------------------- Summary: Completed: Successfully Termination status: 0 Started: 2012-Apr-01 23:01:47 (BST) Ended: 2012-Apr-01 23:01:48 (BST) Duration: 0:00:01.068 Report: Name: utils_database_creation.ssematch Job ID: [utils_database_creation.ssematch]_306edd64.13653c6a903._7d5b Program and parameters: /nfs/public/ro/es/appbin/linux-x86_64/EMBOSS-6.3.1/bin/ssematch -ssinfile i_ssinfile -dcfinfile i_dcfinfile -datafile SSSUB -maxhits 2 -outssfile o_outssfile -outsefile o_outsefile -logfile ssematch.log -auto --- end of parameters Exit code: 0 PassedDownload this log...
view log 2 months agoPASSED
Test began: 2012-03-30 03:05:51 Test ended: 2012-03-30 03:05:53 Result : Test passed ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Preparing caller object for runAndWaitFor operation Calling the service and getting the response Soaplab report received: ---------------------------- Summary: Completed: Successfully Termination status: 0 Started: 2012-Mar-30 03:25:49 (BST) Ended: 2012-Mar-30 03:25:49 (BST) Duration: 0:00:00.890 Report: Name: utils_database_creation.ssematch Job ID: [utils_database_creation.ssematch]_306edd64.13653c6a903._7e30 Program and parameters: /nfs/public/ro/es/appbin/linux-x86_64/EMBOSS-6.3.1/bin/ssematch -ssinfile i_ssinfile -dcfinfile i_dcfinfile -datafile SSSUB -maxhits 2 -outssfile o_outssfile -outsefile o_outsefile -logfile ssematch.log -auto --- end of parameters Exit code: 0 PassedDownload this log...
view log 2 months agoPASSED
Test began: 2012-03-11 15:31:23 Test ended: 2012-03-11 15:31:25 Result : Test passed ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Preparing caller object for runAndWaitFor operation Calling the service and getting the response Soaplab report received: ---------------------------- Summary: Completed: Successfully Termination status: 0 Started: 2012-Mar-11 15:50:15 (GMT) Ended: 2012-Mar-11 15:50:16 (GMT) Duration: 0:00:00.912 Report: Name: utils_database_creation.ssematch Job ID: [utils_database_creation.ssematch]4383c33d.135cd91df62._5884 Program and parameters: /nfs/public/ro/es/appbin/linux-x86_64/EMBOSS-6.3.1/bin/ssematch -ssinfile i_ssinfile -dcfinfile i_dcfinfile -datafile SSSUB -maxhits 2 -outssfile o_outssfile -outsefile o_outsefile -logfile ssematch.log -auto --- end of parameters Exit code: 0 PassedDownload this log...
view log 2 months agoPASSED
Test began: 2012-03-07 04:03:27 Test ended: 2012-03-07 04:03:50 Result : Test passed ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Preparing caller object for runAndWaitFor operation Calling the service and getting the response Soaplab report received: ---------------------------- Summary: Completed: Successfully Termination status: 0 Started: 2012-Mar-07 04:22:03 (GMT) Ended: 2012-Mar-07 04:22:25 (GMT) Duration: 0:00:22.247 Report: Name: utils_database_creation.ssematch Job ID: [utils_database_creation.ssematch]4383c33d.135cd91df62._67fa Program and parameters: /nfs/public/ro/es/appbin/linux-x86_64/EMBOSS-6.3.1/bin/ssematch -ssinfile i_ssinfile -dcfinfile i_dcfinfile -datafile SSSUB -maxhits 2 -outssfile o_outssfile -outsefile o_outsefile -logfile ssematch.log -auto --- end of parameters Exit code: 0 PassedDownload this log...
view log 3 months agoPASSED
Test began: 2012-02-29 04:46:54 Test ended: 2012-02-29 04:47:11 Result : Test passed ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Preparing caller object for runAndWaitFor operation Calling the service and getting the response Soaplab report received: ---------------------------- Summary: Completed: Successfully Termination status: 0 Started: 2012-Feb-29 05:05:20 (GMT) Ended: 2012-Feb-29 05:05:21 (GMT) Duration: 0:00:00.781 Report: Name: utils_database_creation.ssematch Job ID: [utils_database_creation.ssematch]732c72f.1355cdbcc8e._2997 Program and parameters: /nfs/public/ro/es/appbin/linux-x86_64/EMBOSS-6.3.1/bin/ssematch -ssinfile i_ssinfile -dcfinfile i_dcfinfile -datafile SSSUB -maxhits 2 -outssfile o_outssfile -outsefile o_outsefile -logfile ssematch.log -auto --- end of parameters Exit code: 0 PassedDownload this log...
view log 3 months agoPASSED
Test began: 2012-02-19 06:56:20 Test ended: 2012-02-19 06:56:21 Result : Test passed ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Preparing caller object for runAndWaitFor operation Calling the service and getting the response Soaplab report received: ---------------------------- Summary: Completed: Successfully Termination status: 0 Started: 2012-Feb-19 07:13:55 (GMT) Ended: 2012-Feb-19 07:13:56 (GMT) Duration: 0:00:00.722 Report: Name: utils_database_creation.ssematch Job ID: [utils_database_creation.ssematch]732c72f.1355cdbcc8e._5447 Program and parameters: /nfs/public/ro/es/appbin/linux-x86_64/EMBOSS-6.3.1/bin/ssematch -ssinfile i_ssinfile -dcfinfile i_dcfinfile -datafile SSSUB -maxhits 2 -outssfile o_outssfile -outsefile o_outsefile -logfile ssematch.log -auto --- end of parameters Exit code: 0 PassedDownload this log...
view log 3 months agoPASSED
Test began: 2012-02-14 14:36:29 Test ended: 2012-02-14 14:36:30 Result : Test passed ------ stderr and stdout follow ------ Retriving and processing the WSDL and the XSDs imported Preparing caller object for runAndWaitFor operation Calling the service and getting the response Soaplab report received: ---------------------------- Summary: Completed: Successfully Termination status: 0 Started: 2012-Feb-14 14:53:47 (GMT) Ended: 2012-Feb-14 14:53:48 (GMT) Duration: 0:00:00.815 Report: Name: utils_database_creation.ssematch Job ID: [utils_database_creation.ssematch]71a2d5a8.1355cfccf1a._64c7 Program and parameters: /nfs/public/ro/es/appbin/linux-x86_64/EMBOSS-6.3.1/bin/ssematch -ssinfile i_ssinfile -dcfinfile i_dcfinfile -datafile SSSUB -maxhits 2 -outssfile o_outssfile -outsefile o_outsefile -logfile ssematch.log -auto --- end of parameters Exit code: 0 PassedDownload this log...
This test consists of the following files:
domainsse.out
ID D1CS4A_
XX
EN 1CS4
XX
TY SCOP
XX
SI 53931 CL; 54861 FO; 55073 SF; 55074 FA; 55077 DO; 55078 SO; 39418 DD;
XX
CL Alpha and beta proteins (a+b)
XX
FO Ferredoxin-like
XX
SF Adenylyl and guanylyl cyclase catalytic domain
XX
FA Adenylyl and guanylyl cyclase catalytic domain
XX
DO Adenylyl cyclase VC1, domain C1a
XX
OS Dog (Canis familiaris)
XX
SE EEEEEEE
XX
SS SEQUENCE 1476 AA; 189239 MW; 26D85CC5CEC4DAD0 CRC64;
LLLLLLLLLL LLLLLLLLLL LLLLLLLLLL LLLLLLLLLL LLLLLLLLLL LLLLLLLLLL
LLLLLLEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE
EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEL
LLLLLLLLHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHLLLLL
LLLLLLLLLL HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH
HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH
HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH
HHHHHHHHHH HHHLLLLLLL LLLLLLLLLE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE
EEEEEEEEEE EEEEEEEEEE ELLLLLLLLL LLLEEEEEEE EEEEEEEEEE EEEEEEEEEE
EEEEEEEEEE EEEEEEEEEE EELLLLLLLL LLLLLLLLLL LLLLLLLLLL LLLLLLLLLL
LLLLLLLLLL LHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH
HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH
HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH
HHHHHHHHHH HHHHHHHHLL LLLLLLLLLL LLLLLLLLLL LLLLLLLLEE EEEEEEEEEE
EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE
EEEEEEEEEE EEEEEEEEEE EEEELLLLLL LLLLLLLLLL LLLLLLLLLL LLLLLLLLLL
LLLLLLLLLL LLLLLLLLLL LLLLLLLLLL LLLLLLLLLL LLLLLEEEEE EEEEEEEEEE
EEEEEEEEEE EEEEHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH
HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHLLL LLLLLLLLLL
LLLLLLLLLL LLLLLLLLLL EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEHHHHHHH
HHHHHHHHHH HHHHHHHHHH HHHHHHHHLL LLLLLLLLLL LLLLLLLLLL LLLLLLLLLL
LLLLLLLLLL LLLLLLLLLL LLLLLLLLLE EEEEEEEEEE EEEEEEEEEE EELLLLHHHH
HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH
HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HLLLLLLLLL LLLLLLLLLL LLLLEEEEEE
EEEEEEEEEE EEEEEEEEEE EEEEEEEELL LLLLLL
XX
NC 1
XX
CN [1]
XX
CH A CHAIN; . START; . END;
//
ID D1II7A_
XX
EN 1II7
XX
TY SCOP
XX
SI 53931 CL; 56299 FO; 56300 SF; 64427 FA; 64428 DO; 64429 SO; 62415 DD;
XX
CL Alpha and beta proteins (a+b)
XX
FO Metallo-dependent phosphatases
XX
SF Metallo-dependent phosphatases
XX
FA DNA double-strand break repair nuclease
XX
DO Mre11
XX
OS Archaeon Pyrococcus furiosus
XX
SE HEEE
XX
SS SEQUENCE 353 AA; 44425 MW; DBD75CE7EC68E316 CRC64;
LLLLLLLLLL LLLLLLLLLL LLLLLLLLLL LLLLLLLLLL LLLLLLLLLL HHHHHHHHHH
HHHHHHHHHH HHHHHHHHHH HHHHHHHHHE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE
EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE
EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE
EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE LLLLLLLLLL LLLLLLLLLL LLLEEEEEEE
EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEELLLLLLL LLLLLLLLLL LLL
XX
NC 1
XX
CN [1]
XX
CH A CHAIN; . START; . END;
//
sse.in
SE HEEE
SS SEQUENCE 43 AA; 5411 MW; 61C5458D CRC32;
LLLLLLHHHH EEEEEEEEEE EEEEEEEEEE EELLLEEEEE LLL
ssematch.pl
#!/usr/bin/perl
use XML::Compile::SOAP11;
use XML::Compile::WSDL11;
use XML::Compile::Transport::SOAPHTTP;
use strict;
####
eval {
my $inputs = {
'ssinfile_direct_data' => &file2String('sse.in'),
'dcfinfile_direct_data' => &file2String('domainsse.out'),
'maxhits' => '2'
};
my $serviceendpoint =
'http://www.ebi.ac.uk/soaplab/typed/services/utils_database_creation.ssematch';
print "Retriving and processing the WSDL and the XSDs imported\n";
my $wsdl = XML::LibXML->new->parse_file( $serviceendpoint . '?wsdl' );
my $proxy = XML::Compile::WSDL11->new($wsdl);
foreach my $schema ( 1, 2, 3 ) {
my $xsdXml =
XML::LibXML->new->parse_file( $serviceendpoint . '?xsd=' . $schema );
if($XML::Compile::SOAP::VERSION < 2.0)
{
$proxy->schemas->importDefinitions($xsdXml);
}
else
{
$proxy->importDefinitions($xsdXml);
}
}
print "Preparing caller object for runAndWaitFor operation\n";
my $runAndWaitFor = $proxy->compileClient('runAndWaitFor');
print "Calling the service and getting the response\n";
my ( $answer, $trace ) = $runAndWaitFor->( $inputs );
# &printTrace($trace);
my %answer = %{$answer};
my %answer_ = %{ $answer{'runAndWaitForResponse'} };
my $report = $answer_{'report'};
my $detailed_status = $answer_{'detailed_status'};
my $outssfile = $answer_{'outssfile'};
my $outssfile_url = $answer_{'outssfile_url'};
my $outsefile = $answer_{'outsefile'};
my $outsefile_url = $answer_{'outsefile_url'};
my $logfile = $answer_{'logfile'};
my $logfile_url = $answer_{'logfile_url'};
print "\nSoaplab report received:\n----------------------------\n\n$report\n";
if ( $detailed_status == 0 ) {
print "Passed\n";
exit 0;
}
print "Failed\n";
exit 1;
};
if ($@) {
print "Caught an exception\n" . $@;
exit 1;
}
# Print request/response trace
sub printTrace($) {
my $trace = shift;
$trace->printTimings;
$trace->printRequest;
$trace->printResponse;
}
# File to String
sub file2String($) {
my $fname = shift;
open FILE, $fname or die "Couldn't open file: $!";
my $fcontent = join( "", <FILE> );
close FILE;
return $fcontent;
}
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