Services Summary

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MultAlin multiple alignment (CNRS IBCP) cblanchet 13/01/09 EMBRACE, multiple alignment, protein sequence 0
PcProf predict physico-chemical profiles of proteins (CNRS IBCP) cblanchet 15/01/09 EMBRACE, prediction, protein sequence 0
CONSENSUS of protein secondary structure prediction (CNRS IBCP) cblanchet 15/01/09 EMBRACE, prediction, protein sequence 0
HitKeeper heinz 27/08/08 EMBRACE, protein sequence 0
EMBOSS garnier soaplab 03/04/09 EMBOSS, EMBRACE, protein 2d structure, soaplab, Other 0
EMBOSS vectorstrip soaplab 05/05/09 edit, EMBOSS, EMBRACE, soaplab, Other 0
EMBOSS helixturnhelix soaplab 03/04/09 EMBOSS, EMBRACE, protein 2d structure, soaplab, Other 0
EMBOSS patmatdb soaplab 05/05/09 EMBOSS, EMBRACE, protein motifs, soaplab, Other 0
EMBOSS seqmatchall soaplab 07/04/09 alignment local, EMBOSS, EMBRACE, soaplab, Other 0
EMBOSS union soaplab 05/05/09 edit, EMBOSS, EMBRACE, soaplab, Other 0
EMBOSS vrnasubopt soaplab 07/05/09 EMBOSS, EMBRACE, nucleic rna folding, soaplab, Other 0
FASTA protein similarity search (CNRS IBCP) cblanchet 15/01/09 EMBRACE, protein sequence 0
GOR III protein secondary structure prediction (CNRS IBCP) cblanchet 15/01/09 EMBRACE, prediction, protein sequence 0
NetOGlyc - Prediction of o-GalNAc (mucin type) glycosylation sites in mammalian proteins rapacki 23/04/09 EMBRACE, Mammalia, Mucin type O-glycosylation sites, CBS-DTU, protein sequence 0
EMBOSS backtranseq soaplab 03/04/09 EMBOSS, EMBRACE, nucleic translation, soaplab, Other 0
EMBOSS cpgplot soaplab 03/04/09 EMBOSS, EMBRACE, nucleic cpg islands, soaplab, Other 0
EMBOSS cusp soaplab 03/04/09 Codon, EMBOSS, EMBRACE, nucleic codon usage, soaplab, Other 0
EMBOSS sigcleave soaplab 03/04/09 EMBOSS, EMBRACE, protein motifs, soaplab, Other 0
EMBOSS tfscan soaplab 03/04/09 EMBOSS, EMBRACE, nucleic transcription, soaplab, Other 0
RNAmmer pfhallin 19/09/08 DNA sequence, EMBRACE, gene prediction, Hidden Markov Model, HMM, rRNA, RNA sequence 0
EMBOSS antigenic soaplab 03/04/09 EMBOSS, EMBRACE, protein motifs, soaplab, Other 0
EMBOSS silent soaplab 03/04/09 EMBOSS, EMBRACE, nucleic restriction, soaplab, Other 0
NetCTL - Prediction of CTL epitopes in protein sequences rapacki 23/04/09 EMBRACE, Epitope, Immunology, MHC binding, T cell, CBS-DTU, protein sequence 0
PREDATOR protein secondary structure prediction (CNRS IBCP) cblanchet 15/01/09 EMBRACE, prediction, protein sequence 0
The ELM Resource Conservation Filter kate 15/10/08 conservation, EMBRACE, eukaryotic, linear, motif, regulatory, protein sequence, EMBL 0
SIMPA protein secondary structure prediction (CNRS IBCP) cblanchet 15/01/09 EMBRACE, prediction, protein sequence 0
EMBOSS backtranambig soaplab 03/04/09 EMBOSS, EMBRACE, nucleic translation, soaplab, Other 0
EMBOSS digest soaplab 03/04/09 EMBOSS, EMBRACE, protein motifs, soaplab, Other 0
The ELM Resource Structure Filter kate 21/04/09 accessibility, EMBRACE, eukaryotic, ligand domain, linear, motif, regulatory, secondary structure, protein sequence, EMBL 0
blastProDom lauranne.duquenne 20/10/08 EMBRACE, protein sequence, INRIA-UCBL 0
EMBOSS charge soaplab 03/04/09 EMBOSS, EMBRACE, protein composition, soaplab, Other 0
EMBOSS pepcoil soaplab 03/04/09 EMBOSS, EMBRACE, protein 2d structure, soaplab, Other 0
NetPhos - Prediction of generic phosphorylation sites in eukaryotic proteins rapacki 23/04/09 Generic predictions, Kinase specific predictions, Other, phosphorylation, CBS-DTU, protein sequence 0
EMBOSS tmap soaplab 03/04/09 EMBOSS, EMBRACE, protein 2d structure, soaplab, Other 0
Genome Atlas pfhallin 06/05/09 Databases of complete prokaryotic genome sequences, DNA sequence, EMBRACE, Genome Atlases, CBS-DTU 0
CLUSTAL W multiple alignment (CNRS IBCP) cblanchet 19/09/08 EMBRACE, multiple alignment, protein sequence 0
NetGlycate - Prediction of glycation of ε amino groups of lysines in mammalian proteins rapacki 23/04/09 EMBRACE, Glycation, Mammalia, protein sequence, CBS-DTU, protein sequence 0
GeneWiz pfhallin 08/05/09 DNA properties, DNA sequence, EMBRACE, Genome Visualization, CBS-DTU 0
NetChop - Prediction of proteasomal cleavages (MHC ligands) rapacki 23/04/09 MHC class I pathway, Other, Proteasomal cleavage, CBS-DTU, protein sequence 0
SIDDbase pfhallin 06/05/09 DNA sequence, EMBRACE, SIDD - databases and tool for estimates of stress-induced DNA duplex destabilization, CBS-DTU 0
Pcons.net stockholm_dbb 10/12/08 EMBRACE, protein structure, Quality assessment, molecular structure 0
SignalP - Prediction of signal peptide and cleavage sites in gram+, gram- and eukaryotic amino acid sequences rapacki 07/05/09 EMBRACE, Hidden Markov Model, neural network, signal peptides, CBS-DTU, protein sequence 0
JACOP/FuncNet heinz 26/11/08 EMBRACE, FuncNet, prediction, protein sequence 0
Pfrag stockholm_dbb 12/12/08 EMBRACE, Homology modelling, protein structure, molecular structure 0
Pdb fix stockholm_dbb 12/12/08 EMBRACE, protein structure, molecular structure 0
SHRIMP stockholm_dbb 12/12/08 EMBRACE, Hidden Markov Model, membrane protein, pairwise alignment, protein sequence 0
TOPCONS stockholm_dbb 11/12/08 EMBRACE, membrane protein, prediction, protein, structure, topology, protein sequence 0
mprap stockholm_dbb 20/04/10 accessibility, EMBRACE, protein sequence 0
BLASTatlas pfhallin 06/05/09 DNA sequence, EMBRACE, CBS-DTU, protein sequence 0
PRODIV-TMHMM stockholm_dbb 15/12/08 EMBRACE, membrane protein, protein sequence, protein structure, topology, protein sequence 0